barSeed - Barley Seed Development Database

Probe CUST_28977_PI390587928

Source Contig U35_20336

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28977_PI390587928	Hv_44K_v2	AGTCCAAACTGATGATGCTGTGTGTTCCATGCTTCAATACAATAACACTTTCTCAAAAAA	758	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.869	1.956	1.104	0.773	0.349	0.366
Raw	312.058	515.769	252.600	288.093	42.475	50.778

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369931	1026	3e-22	787 - 842	100	56 / 56	plus	ABC17793
Harvest21	ABC17793	826	3e-25	759 - 818	100	60 / 60	plus	ABC17793
Harvest35	U35_20336	870	3e-25	759 - 818	100	60 / 60	plus

Contig Sequence (870 bp)

>U35_20336 870 Hv_44K_v2
TAAACATTTCCGAGTTCCGCTCCCCGATGCCGCCCACCTCCCTCCTCCTCCTCCTCCTCC
TGCTCGCCGGCGGCGCCGCGGCGGAGCCCCCGGCCCCGGCGCCCCCGGCGGCGAGGAACG
AGACCATCTACGACATCCTCCCGCTCTTCGGCCTCCCCGCGGGCGTCTTCCCGGCCAACG
TCACCGCCTTCTCGCTCGCCGACAACGGCAGCCTCGCCGTCGACCTCGCCGGGCCCTGCT
ACGTGCACTTCGAGTACCTCACCTACTTCGAGCCCCGCGTCACGGGCGTGCTCCGCTACG
GCTCCCTCACCGAGCTCCAGGGCGTGCAGGTCCGCCGCTTCCTCGTCTGGTTCACCGTCG
TCCGCGTCAAGGTCGACCTGCCCCCGCCCCCGCGCTTCGTCTACCTCGACATCGGCTGGA
TCACCCGCAAGCTCCCCGCCGCCGACTTCCAGTCCCTCCACCCCTGCGAGGACTCCAAGA
GGCGCGGGTGCCGCCTCTCCTCCGCGCTCGCCGCCGCCGCCGCTTGGTTCCAGGACTTCT
TTGCCCAGTTTTAGGGGATGCAGAAGGTCTAATTTTGTGGCATCATCACACGAGCTTACA
GCCTTCTGCGTCCTCAAGGAATTGAAGAACCACACTCCCATTTGTTGATTGTTACACACG
CACGGTGTATGTCTCTACGAGTACTCGACGCTGCTGTCTGAGCTCTACCATTGTTTGAGA
GGCAGACGATCTTATGAAAGATTTGTATTGGTTATCTTAGTCCAAACTGATGATGCTGTG
TGTTCCATGCTTCAATACAATAACACTTTCTCAAAAAAAAAAAAAAGGTCTATATCATCA
TTTTGTTGGAACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20336 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g48710.2	178	5e-73	protein\|expressed protein
Brachypodium v1_2	Bradi1g11950.1	190	6e-79
Arabidopsis v10	None