barSeed - Barley Seed Development Database

Probe CUST_28976_PI390587928

Source Contig U35_20337

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28976_PI390587928	Hv_44K_v2	CTTGATGGGCAGATATACTAATCGTTTTGATGTGAATAGTGAACTGGATATTGGTTCTTT	866	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36463.2	2184	2e-24	1126 - 1185	100	60 / 60	minus	ABC16583
JLOC1	JLOC1_23479.1	1171	8e-25	123 - 182	100	60 / 60	minus
Harvest21	ABC16583	941	3e-25	865 - 924	100	60 / 60	plus	ABC16583
Harvest35	U35_20337	943	3e-25	867 - 926	100	60 / 60	plus

Contig Sequence (943 bp)

>U35_20337 943 Hv_44K_v2
AAACCCAAACGTAAGCCCAAACCGGGAGACCCCGCACCTAAATCTAGGGTTTCGCTTCCC
CTCCGCAGGATGGCTGGCCCCGCCGCCGCCGGCTCCGGCGCCGTCGTGCCCGCCGGCGAC
AGCGAGGGTTGGACCCCGAGGTTTGGCGACATGGTCTGGGGCAAGGTGAAGTCTCATCCG
TGGTGGCCGGGCCACGTCTACAGCCTCACCCTCTCCGACGACCCGGAGGTGCATCGCGGC
TACCGCCATGGCCTCGTCCTCGTCGCCTTCTTCGGAGACGGCAGCTACGGCTGGTTCGAG
CCGCACGAGCTCGTCCGCTTCGAGGACCACTTCACCGAGAAGACCTCGCAGGGGGGCAGC
CGCACCTTCCCCGCCGCCGTCGCCGAGTCCCTCGACGAGATCTCGCGCCGCAGCGCGCTC
GCGCTCCTCTGCCCCTGCCGCGTGCCCGACACCTTCCGCTCCCACAACGAGGATCCCAGG
TTCCTCCTGGTGAACGTGCCCGGGTTCGACAGCAACGCTGAGTACCTCCCCGACCAGGTG
ACGGCCGCGCGGGAGCGGTTCGTCCCGCAGAAGATGTTTGACTTCCTGCAGAACGCTGCC
GTGCAGCAGCGGGACGCGGCGGAGACGGCCGCACGGACCTTGCCTGGGATCGAGATGACA
GCGATGCTCATGGCGTACCGCCGGTCTAGGTATGAGAGGTACGACCTCACCTACGCCGAA
TCATTTGGGGTGGATTCGAAGAAGGCCCTTGAAGGCGAGGTCAAAGCTGAGAATGAACGG
TCTCAACGAGGTATCGACACTCACATGCCCAATCCTAGTAGTAATACTATTCACTGTTCT
GTTATTGTTTTTGCTGTGTACTTGAACTTGATGGGCAGATATACTAATCGTTTTGATGTG
AATAGTGAACTGGATATTGGTTCTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20337 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g35880.1	289	1e-134
Arabidopsis v10	None