barSeed - Barley Seed Development Database

Probe CUST_28973_PI390587928

Source Contig U35_32311

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28973_PI390587928	Hv_44K_v2	ACAGAGGTGACGTCGAGAGGAAGCACTTCTCAATCAAGGAGCAAATACAAGCGGTTAATT	372	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51985.3	4974	2e-24	1563 - 1622	100	60 / 60	plus	ABC13136
MLOC	MLOC_51985.5	5200	2e-24	1521 - 1580	100	60 / 60	plus	ABC13136
MLOC	MLOC_51985.4	5181	2e-24	1495 - 1554	100	60 / 60	plus	ABC13136
MLOC	MLOC_51985.2	5022	2e-24	1624 - 1683	100	60 / 60	plus	ABC13136
MLOC	MLOC_51985.1	5522	2e-24	1840 - 1899	100	60 / 60	plus	ABC13136
JLOC1	JLOC1_33251.4	5186	8e-25	1500 - 1559	100	60 / 60	plus
JLOC1	JLOC1_33251.3	5260	8e-25	1574 - 1633	100	60 / 60	plus
JLOC1	JLOC1_33251.2	5380	8e-25	1694 - 1753	100	60 / 60	plus
JLOC1	JLOC1_33251.1	5092	8e-25	1694 - 1753	100	60 / 60	plus
Harvest35	U35_32311	432	3e-25	373 - 432	100	60 / 60	plus

Contig Sequence (432 bp)

>U35_32311 432 Hv_44K_v2
AAAAACTCAGCGTCTCTATACAAGAGGAGCAGCTCAAGAGCATGCAAGCGGAAATGGCAC
GACTGTCTTTAGAGAAGCAGTTGGCACAAGTACAGGAGAAGCTGCGGCTTTTGTCTCTTG
AAAAGCACGGTGAAACAAGCAAGTGTAAGGATGTTGAAGCAAGCAAGCTTATGCTTCAGA
AAGAATTGGAGATGATTCGAGAAGAGAACCGTAAACTGGATGATCAAAACCACTCCTCGA
CATCCGTGATAATTCGTCTGCAGGATGAGATCATATCCTTGAAGAATGCACAACGGAAAC
TTGAGGAGGAGGTGTCTCGGCATGTGGAGGAAAAGAAGGCACTTCAACATGAGCTTTCAC
ACATANAGAATGACAGAGGTGACGTCGAGAGGAAGCACTTCTCAATCAAGGAGCAAATAC
AAGCGGTTAATT

Homology of Contig U35_32311 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g41200.1	1592	9e-64	protein\|KIP1, putative, expressed
Brachypodium v1_2	Bradi4g02420.1	1546	4e-77
Arabidopsis v10	None