barSeed - Barley Seed Development Database

Probe CUST_28970_PI390587928

Source Contig U35_32314

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28970_PI390587928	Hv_44K_v2	GAACTTGACAGGCTGAAGATGGAGCTTCACCAAAAGCTTGTGCAAAGTGATAATTTTGAA	349	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365668	3710	2e-24	1007 - 1066	100	60 / 60	plus	None
MLOC	MLOC_60690.4	1530	2e-24	427 - 486	100	60 / 60	minus	None
MLOC	MLOC_60690.3	3181	2e-24	2388 - 2447	100	60 / 60	minus	None
MLOC	MLOC_60690.2	3378	2e-24	2586 - 2645	100	60 / 60	minus	None
MLOC	MLOC_60690.1	3497	2e-24	2704 - 2763	100	60 / 60	minus	None
JLOC1	JLOC1_39596.3	2423	8e-25	735 - 794	100	60 / 60	plus
JLOC1	JLOC1_39596.2	3490	8e-25	735 - 794	100	60 / 60	plus
JLOC1	JLOC1_39596.1	3414	8e-25	722 - 781	100	60 / 60	plus
Harvest35	U35_32314	409	3e-25	350 - 409	100	60 / 60	plus

Contig Sequence (409 bp)

>U35_32314 409 Hv_44K_v2
CTTCGCGGTGGTCGGAGGTAACAGGCCCCTTCAGGTGCTTGACATCAGGGCTTATGTTGG
GAGCAATGGTGTTATCATCATCAACTTCAAGGGAGTAAGAGGGAACCCCATGGTTTGTGG
CATCTGCGTTCGGAAAGCCCCAGCAACACCAGCGGCAAAGTTAGGTACACGTGGGACTGG
CTTATGCAAAAAGTGTTTAACTGTTGTTGAGATTTCTTCACCTATTCAGAAAAGGACAAT
AAAACTGATCTCAAAGTACGAGAAACAGATTGAGGACCTAACCAGCCAATGCACCAGCAA
GTCCGATGAGTGCTCCATGGCATGGTCTTTAGTAGAATCTACCAACCAAGAACTTGACAG
GCTGAAGATGGAGCTTCACCAAAAGCTTGTGCAAAGTGATAATTTTGAA

Homology of Contig U35_32314 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None