barSeed - Barley Seed Development Database

Probe CUST_2896_PI390587928

Source Contig U35_16331

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2896_PI390587928	Hv_44K_v2	ATAAGCTGCTGTAGTAGTATTTGGGGAAACAAATATGTACCAAACTGTTCCGATCTGAAA	2276	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78143.1	2653	6e-24	2517 - 2575	100	59 / 59	plus	ABC05196 ABC14716
MLOC	MLOC_78143.2	2437	9e-22	2382 - 2436	100	55 / 55	plus	ABC05196 ABC14716
JLOC1	JLOC1_52084.1	2837	3e-24	2442 - 2500	100	59 / 59	plus
Harvest21	ABC05196	2372	1e-24	2284 - 2342	100	59 / 59	plus	ABC05196
Harvest35	U35_16331	2350	3e-25	2277 - 2336	100	60 / 60	plus

Contig Sequence (2350 bp)

>U35_16331 2350 Hv_44K_v2
GCAAAAACCTCGCCCACTTCCTCTCCCATTCCTCGACCCCCCCTCCCGAAGAAGGCGGCG
GCAGCAGGAGCTGGGTGCCAGTGCGGGGAGTGACCGGCGCGTGGAGATGAAGTATGTGCT
GGTGACCGGCGGCGTGGTGAGCGGGCTGGGCAAGGGCGTGACGGCCAGCAGCATCGGCGT
GCTCCTCAAGGCCTGCGGCCTCCGCGTCACCTCCATCAAGATCGATCCGTACCTCAACAC
CGATGCCGGAACCATGTCCCCCTTCGAGCACGGCGAGGTCTTCGTCCTCGAAGACGGCGG
CGAGGTGGACTTGGATCTTGGAAATTACGAGCGGTTTTTGGACATCAAGTTGACCCGCGA
CAACAACATAACCACTGGGAAGATCTACCAGGCTGTTATTAACAAGGAACGAAAAGGAGA
CTACCTGGGAAAAACTGTTCAGGTTGTGCCGCACATTACTGATGAAATACAAGACTGGAT
TGAACGTGTGGCGATGAATCCGGTTGATGGCACAGATAAGCCAGCTGATGTTTGTGTCAT
AGAACTTGGTGGCACCATAGGGGACATCGAATCAATGCCTTTTATCGAAGCATTGGGTCA
ATTTTCGTACCGCGTAGGACCTGGAAACTTTTGCTTGGTTCATGTTAGTCTTGTACCAGT
TCTAACCGTAGTTGGTGAACAGAAAACAAAGCCTACCCAGCATAGTGTCCGTGGACTAAG
AGGACTTGGGTTGATGCCTGATATCTTGGCATGCCGCAGTACTCAGCCACTGGAAGAAAA
TGTGAAACTGAAACTCTCACAGTTTTGCCAAGTTCCGGTTTCAAATATCGTTAATCTCCA
TGATGTAACAAATATCTGGCACATCCCTTTGTTGCTCAGGGATCAGAGAGCCCATGAAGC
TATTTTGAAGGTTCTGGGCCTTTGGTGTGTGGGGAAAGTGCCTAAAGAACCTAAGTTGTC
TGAATGGACTGAAAGAGCCAGCAGATTCGACAAACTGAAATCTCCGGTCAGGATTGCCAT
GGTTGGAAAATATACCGGCATATCGGATTCCTACTTATCTATTTTGAAGGCTCTTCTGCA
TGCGTCGGTTGCTTTGGACAGGAAACTGGTGGTGGACTGGGTTCCTTCCTGTGATCTTGA
AGATTCTGCTGCCGAAGAGACGCCTGAAGCCTATAAAAAAGCATGGGGTCTGCTAAAGGG
TGCAAATGGGGTGCTAGTTCCGGGAGGCTTTGGAGACAGAGGTGTCCAGGGGAAAATCCT
TGCTGCGAAACATGCACGAGAAAACAACGTTCCGTACCTTGGCATTTGCTTGGGCATGCA
AATTGCAGTGATCGAGTATGCACGTTCTGTCATGAAGCTGCGTGATGCTAATAGCACGGA
GTTCGATCCTGCTGCAAAAACACCATGTGTTATCTTCATGCCAGAGGGCTCCAAAACCCA
CATGGGTGCGACGATGCGCCTCGGTTCAAGGAGGACATTTTTCCAGGTCAACAACTGCAA
ATCTGCTAAACTGTATGCCAATGCTAACTATGTTGACGAAAGACACCGCCACAGATACGA
GGTGAACCCTGACATGGTCTCAGACTTTGAGAAAGCAGGGCTTTCTTTCGTGGGCAGGGA
TGAAAGCGGGAGACGCATGGAGATTATTGAGCTGCCAGCTCATAAGTTCTTCGTGGGTAC
GCAATTTCATCCTGAATTTAACTCTAGGCCTGGAAAGCCATCACCACTTTTCTTAGGACT
GATCGCGGCGTCGTCTGGACAGCTAGAGCCCTTGCTTCAGCCTACTTCGGGTGCTGTCAC
CTCGCCGACCAGGTGCATCGCCGGTCCAGGAGCCCCTAAGGCGAAGTTTAAGATGAACGG
CCTGAAGTCGACGTACTACGCGAATGGCAGCAGCATTCACATCTAGCAGCACGGCAGCAG
ATCAGTTTTTCTTTTTCTTTTCTGCATGTGTTTTTTTCCTTTTCTTTTTCTTTTTCTTTA
GTATGGATCTATCTCTCTGATCAAGGAAGAAGAGATGTCAGCTCCAGCGACATGACGAGC
CGTTTCCGGTTTTTATGAAGGGAACTATTTGGCGTCGCTCGCGCGGAAGCAAAATTAGCT
AGGGTTTATTAGTGCTGCTCTAGTCTTGCTTGCTTGTTCGTTTGTTTCATTAAGGATTTT
ATTATCAAGGTTGTAAAGGCTGGGGATGTGCAGCTAGCTTCAGTTTCAAGCCTGCCGTCT
CGCCTGCTTGTACATTCTAAAACAGAACCGCTGCTCTCTCGAGTGACTGAATGATTATAA
GCTGCTGTAGTAGTATTTGGGGAAACAAATATGTACCAAACTGTTCCGATCTGAAAAAAA
AAAAAAAAAA

Homology of Contig U35_16331 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g49770.1	609	protein\|CTP synthase, putative, expressed
Brachypodium v1_2	Bradi2g15810.1	600
Arabidopsis v10	AT3G12670.1	591	\| Symbols: emb2742 \| CTP synthase family protein \| chr3:4020351-4024086 REVERSE LENGTH=591