barSeed - Barley Seed Development Database

Probe CUST_28967_PI390587928

Source Contig U35_18022

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28967_PI390587928	Hv_44K_v2	GGCAGTTGCATCTTTTGTGATAATTGGAGATTTATTCCTTTTCTTTGTAGCAGTATGTGA	1224	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363308	2137	2e-24	2012 - 2071	100	60 / 60	plus	ABC09208 ABC10443
MLOC	MLOC_45170.2	461	2e-24	4 - 63	100	60 / 60	minus	ABC09208
MLOC	MLOC_45170.1	513	2e-24	23 - 82	100	60 / 60	minus	ABC09208
JLOC1	JLOC1_29318.1	623	8e-25	432 - 491	100	60 / 60	plus
Harvest21	ABC09208	1315	3e-25	1152 - 1211	100	60 / 60	plus	ABC09208
Harvest35	U35_18022	1388	3e-25	1225 - 1284	100	60 / 60	plus

Contig Sequence (1388 bp)

>U35_18022 1388 Hv_44K_v2
CACGCGTCCGATGAGTTCTTCTCAAGAGCAGGGAAGGTTCGTGATGTCCGCCTTATCATG
GACCGAAACTCGCGGCGTTCCAAAGGAGTTGGGTACATCGAGTTCTATGATGTCATGTCT
GTTCCAATGGCAATTGCTCTAACCGGTCAGCCGCTCCTAGGGCAAGCAGTCATGGTTAAG
CCATCAGAGGCCGAAAAGAACTTAGCTCAGTCAAATGCGACATCTGGTGGAGCAGCTTCA
GGTGGAGCAAGAAAGCTGTATGTTGGCAACCTTCATTCCAATATCACCGAGGACCAGTTG
AGACAGGTCTTTGAACCATTTGGGCAAGTGGAGCTTGTCCAGCTGCCGGTAGATCCACTC
ACTGGGCTGTGCAAAGGTTTTGGTTTCATTCAGTTTGCACGGCTTGAAGATGCAAAAGCT
GCTCAGAGTTTAAATGGCCAACTTGATATTGCTGGGAGAGTAATAAAGGTCTCGGCTGTT
ACTGATCAGGGCGGTGTGCAACTTGGCACAACTACTGGAGATTTAGATGATGACGAAGGT
GGAGGCTTGGCATTAAATGCAAGCTCTAGAGCCCTTCTGATGCGGAAATTGGACCGCAGT
GGCACTGCAACCAGCTTAACTGGTGGCATTGGTGCTCCTGGATTGAACTCATCTGTTGGA
TTGCCCGCTGCATCAGTGCTTGGAGCTCCTCTGACAGCTGCTTCTCTTCTTGTACAGCCT
GTTGGAGCAGTTCCAGGGGCACCTCTTCCTATCATCTCTCAATCTGCTGATATTGGTACA
CCTACTGAATTCCTATTACTGAAGAACATGTTTGACCCATCAGTGGAGACGGATCCTGAT
TTTGATTTGGATATTAGAGATGATGTGCAAGAGGAATGTTCGAAATTTGGTGTAGTGAAA
CATATTTTTGTTGACAAGCATACTGCTGGCTTTGTGTACCTGCATTTTGATAGCGCAACA
GCAGCAGCAAGTGCGCAACGATCACTTCACGGCCGATGGTTCGCTGGAAAGATGATTACG
GCAACCTTTATGACAGCACACCAGTATGAAATGAAGTTCCCAGACCGCGCAGGTATGGAA
TGAAATTCACAAAGCAGACAAGTTATCTGGTGATGGATCTAGGGCTGTTAAACGGTTCCA
ATTGAAGTTGTGAAATCTTGAGTGGAGTAACCTTGTTAGTTATTGTTTCCTGTAACATTA
TGAACACTAGAGGTCTGTTGTCTGGGCAGTTGCATCTTTTGTGATAATTGGAGATTTATT
CCTTTTCTTTGTAGCAGTATGTGAAAATGCTGGATTTTCTTTTCTATGTCATACAAAAAA
AGGTCAAGAAATGTATAACATGGTTAAAGCATTTGAGTTCTTTTACCTTCTAAAAAAAAA
AAAAAAAA

Homology of Contig U35_18022 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g30370.1	340	4e-173	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi3g27480.1	598	0.0
Arabidopsis v10	AT5G09880.1	527	2e-130	Splicing factor, CC1-like \| chr5:3081646-3085179 REVERSE LENGTH=527