barSeed - Barley Seed Development Database

Probe CUST_28961_PI390587928

Source Contig U35_18027

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28961_PI390587928	Hv_44K_v2	GATCTGCACTAATTGTGGGATTTTGCTTGTGTTTATTGGCCTGATGATGTTTTGGTGAAA	2553	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.428	1.533	1.156	0.764	0.343	0.351
Raw	3903.487	6435.737	4340.860	4388.187	706.997	785.898

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_46083.2	6420	2e-23	129 - 186	100	58 / 58	minus	ABC08091
MLOC	MLOC_46083.1	6955	2e-23	142 - 199	100	58 / 58	minus	ABC08091
MLOC	MLOC_46082.1	327	7e-23	271 - 327	100	57 / 57	plus	ABC08091
JLOC1	JLOC1_29867.3	6829	1e-23	6617 - 6674	100	58 / 58	plus
JLOC1	JLOC1_29867.2	6705	1e-23	6493 - 6550	100	58 / 58	plus
JLOC1	JLOC1_29867.1	6400	1e-23	6188 - 6245	100	58 / 58	plus
Harvest21	ABC08091	2627	3e-25	2554 - 2613	100	60 / 60	plus	ABC08091
Harvest35	U35_18027	2627	3e-25	2554 - 2613	100	60 / 60	plus

Contig Sequence (2627 bp)

>U35_18027 2627 Hv_44K_v2
GAGTGGGAAGACTATCTGTGCGGAATTTGCTATACTAAGGAACCACCAGAAGGCTGTATC
TGGTGAAACCAACATGCGTGTTGTGTATATAGCACCTATTGAGGCTCTGGCCAAAGAAAG
ATACAGAGACTGGTCAAAGAAATTTGGTGAATTTGCCCGTGTAGTTGAGCTAACAGGCGA
AACTGCAGCTGATTTGAAACTTCTTGACAAAGGGGAGATCATTATTAGTACTCCTGAAAA
GTGGGATGCACTTTCTCGTCGGTGGAAGCAGCGGAAACCTGTCCAGCAAGTCAGCTTATT
TATTGTTGATGAGCTTCATCTAATTGGATCTGAGAAGGGACATGTCCTGGAAATAGTTGT
CTCTCGGATGAGGCGTATTTCAAGTCATATTGGCACTAACATCCGGATTGTAGCCCTTTC
AGCATCACTTGGAAATGCTAAAGATCTTGGAGAATGGATTGGCGCTACTGCTCATGGTCT
TTTCAACTTCCCCCCAGCAGTGCGGCCAGTTCCACTGGAAATACACATTCAGGGTGTGGA
TATAGCAAATTTTGAGGCAAGAATGCAAGCAATGGCGAAGCCAACATACACTGCTATCAC
TCAACATGCAAAGAGTGGTAAGCCTGCCCTGGTGTTTGTGCCGACACGGAAGCATGCAAG
GTTGACTGCATTGGACCTGTGTGCATACTCAAGTGCTGAGGGTGCCGGTACACCATTCCT
TCTTGGGTCCCAAGATGAGATGGATACTTTCATTGGAGGTGTCAATGAAGAAACGCTTAA
AAATACGCTGAGATGTGGTGTGGGCTACTTGCATGAGGGTCTTAGTGACCTTGACCAGGA
ACTTGTGACTCAGCTCTTTCTTGGTGGGAGGATCCAAGTGTGTGTTGCAAGCAGCACGAT
GTGCTGGGGGAGATCATTGCCTGCTCATTTAGTTGTTGTGATGGGAACCCAGTATTATGA
TGGCCGGGAGAGTGCTCATACTGATTATCCAATCACTGATCTGCTGCAGATGATGGGTCA
TGCTAGCAGGCCTCTTCAAGATAACTCTGGGAAATGCGTTATATTGTGCCATGCACCTCG
GAAAGAGTACTACAAGAAGTTCCTTTTTGAGGCCTTCCCTGTGGAGAGTCATCTCCATCA
TTTCTTGCATGACCATATGAATGCTGAGGTTGTTGTGGGTGTTGTAGAAAACAAACAAGA
TGCAGTGGACTATCTTACATGGACTTTCATGTACAGGCGGCTGAACAAGAACCCTAACTA
CTACAATCTGCAGGGTGTAAGTCACAGGCATCTGTCAGATCATCTTTCTGAGCTAATCGA
GACAGTGTTGAATGACCTGGAGTCAAGCAAGTGTGTGGCTGTAGAGGAGGACATGTACCT
GAAGCCGCTCAACCTTGGTCTCATTGCTGCGTACTACTACATTAGTTACACCACTATCGA
ACGGTTCAGTTCGATGCTAACTCAGAAGACTAAGATGAAAGGTCTCCTGGAAATTCTAGC
TTCGGCATCAGAATATGCAGAGCTTCCAAGTCGCCCAGGCGAAGAGGAATACATTGAGAG
GCTAGTCCGTCACCAGAGGTTTTCTATTGACAAGCCCAAGTATGGCGATCCACATGTCAA
GGCCAACGCCCTGCTGCAATCCCACTTTGCAAGGCACACGGTGGTAGGGAACCTGGCAGC
AGACCAGCGGGAGATCCTCCTTTCCGCCCATAGACTGCTCCTGGCGATGGTTGATGTCAT
CTCCAGCAGCGGATGGCTCACTCTGGCTCTGAATGCAATGGAGTTGAGCCAGATGGTGAC
GCAAGGTATGTGGGATCGTGACTCTGTGTTGCTCCAACTCCCACACTTCACCAGGGACCT
GGCCCGGCGATGCCAGGAAAACGAAGGGAAACCTGTAGAGAGTATCTTTGATCTGGCTGA
GATGAGCATCGATGAGATGCGGGATCTGCTGCAGCTGTCAAACTCTGAGCTGCAGGACAT
CGTTGAGTTCTTCAAGCGGTTCCCCAACGTCGACATGTCTTATGAAGTCCGCGAGGGTGA
CGACATAAGGGCCGGCGACAACGTGACCTTGCAGGTGACTCTGGAGCGTGACATGACCAA
CCTGCCCAACTCTGAGGTCGGCCCGGTGCACGCCCCCAGGTTCCCCAAGACCAAGGAGGA
AGGTTGGTGGCTGGTGGTCGGCGACAGCTCCACCAAGCAGCTGCTGGCGATCAAGAGGGT
CACCCTCCAGAAAAGGGCCCGTGTGAAGCTTGAGTTCACCGCCGCCACCGAGACAGGGAG
GAAGGACTACATGATCTACCTGATGTCAGACTCCTACCTCGGCTGTGACCAGGAGTACGA
GTTCACCGTCGACATCAAGGAAGCTGGAGGTGACTGATTTAGATCACCAAAAACTCTTTT
TTATACCTTTTTTTTCCTGCTCTTATGCAGAGATTATTATGTGACCTGAAACTTGTTATC
ATCTTCTTGTCTGTAATGTAACACCTGAAGTTTAGCTTTGATTCAGTGTAACCTGATGCA
CATGTTTTCGCTTTTTTTGTATCAACAAAGGAGGATCTGCACTAATTGTGGGATTTTGCT
TGTGTTTATTGGCCTGATGATGTTTTGGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_18027 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g01740.1	2178	protein\|U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
Brachypodium v1_2	Bradi3g00980.1	2180
Arabidopsis v10	AT1G20960.1	2171	\| Symbols: emb1507 \| U5 small nuclear ribonucleoprotein helicase, putative \| chr1:7302591-7309914 REVERSE LENGTH=2171