barSeed - Barley Seed Development Database

Probe CUST_28959_PI390587928

Source Contig U35_18029

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28959_PI390587928	Hv_44K_v2	GTGCATTTGGTGCTTGTTCCCCCTATTTTATATACTATGGATTATTTCAAGACTATGCAA	1499	GeneList: grey60 MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.447	3.069	1.043	0.909	0.364	0.399
Raw	419.022	618.437	176.515	236.995	34.455	41.623

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52115.1	1704	7e-23	3 - 59	100	57 / 57	minus	ABC09924
JLOC1	JLOC1_33351.1	1741	4e-23	1603 - 1659	100	57 / 57	plus
Harvest21	ABC09924	1575	4e-24	1500 - 1557	100	58 / 58	plus	ABC09924
Harvest35	U35_18029	1574	3e-25	1500 - 1559	100	60 / 60	plus

Contig Sequence (1574 bp)

>U35_18029 1574 Hv_44K_v2
ACACACACACACAGCTCTCTCCCTCCTCTCTAAATACTCCCCATGCCCCTCGCCGTCCTC
CTTTGAAGAAGCCAATGGCCAGCAATGGCATGGCGTCCTCCCCCTCCGCCTTCTTCCCTC
CCAATTTCCTCCTCCACATGCAGCAAGCGCCGCCGCCGCATGACCCCCAAGAACACCACC
AGCACCACCACCACCACCACCATGAGCACCACCTGCCTCCTCCCCACCCCCAGCACAACC
CCTTCCTCCCCTCCCCCCAATGCCCCTCCCTCCAGGACTTCCGTGGCGGTCTGTCGCCAA
TGCTGGGGAAGCGCCCGGCGATGTACGGTGGCGGCGACGGGGGCTGCGACGAGGTGACCG
GCGGCGGCGGCGGCGCGAACGAGGAGGAGACCTCGGACGACGGGTCGCAGCTGGGCGGCG
AGAAGAAGCGGCGGCTGAACGTGGAGCAGGTGCGCACGCTGGAGAAGAACTTCGAGGTGG
CCAACAAGCTGGAGCCGGAGCGCAAGATGCAGCTGGCGCGCGCGCTGGGTCTACAGCCCC
GGCAGGTTGCCATCTGGTTCCAGAACCGCCGCGCCCGCTGGAAGACAAAGCAGCTGGAGA
AGGACTACGACGTGCTCAAGCGCCAGTTCGACGCCGTCAAGGCCGAGAACGACGCCCTCC
TCTCCCACAACAAGAAGCTCCAGTCCGAGATACTGGGACTGAAGGGCTGCAGGGAGGCGG
CGTCGGAGCTGATCAACCTCAACAAGGAGACGGAGGCGTCCTGTAGCAACCGCAGCGAGA
ACAGCTCCGAGATCAACCTCGACATCTCGCGCACGCCGCCGTCCGACGGCCCCATGGACG
CTCCGCCGTCGCACCAGCAAGGCGGCGGCGGCGGCGGGGGCATGATCCCCTTCTACCCCT
CCGTGGCGCGCCCCGCCGGCGTCGACATCGACCATCTCCTGCACGCCTCCGTCCCCAAGA
TGGAGCACCACCACGGCGCCCCTGACACGGCCAGCTTCGGCAACCTGCTCTGCGGCGTCG
ACGAGCCGCCGCCCTTCTGGCCGTGGGCGGATCACCAGCAATTCAACTGATGGTTCGATC
GGCACGACGATATATATCTTGTTGCAGTCAGTCACGTCTGCTTTGCTCGCACGATCAGCA
ATGAGCGTGCATAAATATTCGATGCGTTTGGATTCTTGATGAGGACGTACGTACGTACGG
TGGAGACGGTTGTACATGCATGTTTGATGGGAGGCAAGTTCAGTTCATCCATGAGAAGCC
CAAGATGGCGATGCGATTTGAGTCATGGATCGATGGAGAGTTGATGATGAATAGTGGGGG
CACGTGTGTAGGGGAATAAGTCCGGTGTGTGTGAAGCGTGTGTAGGTAGATTTTGGAGTT
TGAATAGTATCTTTGCTATTATTATTTTTCTTGTCCTTTTTTTCCTCTCCCTTTTTTGTT
CCCATACATAAATTTGTGAATTGTGAGGCGGTGTTGATCCGTCGTTGTATAGGTTAATGG
TGCATTTGGTGCTTGTTCCCCCTATTTTATATACTATGGATTATTTCAAGACTATGCAAA
AAAAAAAAAAAAAA

Homology of Contig U35_18029 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g07450.1	367	6e-135	protein\|homeobox associated leucine zipper, putative, expressed
Brachypodium v1_2	Bradi1g73190.1	336	3e-156
Arabidopsis v10	AT1G69780.1	294	1e-77	\| Symbols: ATHB13 \| Homeobox-leucine zipper protein family \| chr1:26259166-26260465 FORWARD LENGTH=294