barSeed - Barley Seed Development Database

Probe CUST_28951_PI390587928

Source Contig U35_20347

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28951_PI390587928	Hv_44K_v2	GGTTAGTGAGTTAGTTGTCCAGCAGAACTTGACAGGTGGCGTGCTGCATTATTTGAGTTT	1023	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.260	1.524	1.212	0.988	0.395	0.393
Raw	376.024	717.033	501.346	649.199	90.952	96.399

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51712.1	2251	2e-24	2106 - 2165	100	60 / 60	plus	ABC14188
JLOC1	JLOC1_33053.1	1908	8e-25	1774 - 1833	100	60 / 60	plus
Harvest21	ABC14188	1091	3e-25	1024 - 1083	100	60 / 60	plus	ABC14188
Harvest35	U35_20347	1091	3e-25	1024 - 1083	100	60 / 60	plus

Contig Sequence (1091 bp)

>U35_20347 1091 Hv_44K_v2
GGACCATGCTGTCATGCTCTGGCAAGAGAAAGATGATTCATGGAACTTCAAGAAAGTGCA
CAGGGATCAGCATTCTTCTGGTGTCATGGGTGTTGTCGGATTGCAACAGAGAAAAACAAT
AATATCAGTCGGACTTGACAAGAGGATAATATCATATGATGTTGCAACTGAAAGGACAGA
GTACAAGAACCTAATTGATAGCAAATGCTTGAGCGTATTACTTAATCCAAGCGATTTCAA
CCTATACATGGTACAAACAGGGTCGCCAGGCAGGCAGCTTCGCTTATTTGACATCAGGCT
TAGGCAGACCGAGGTTCACGCGATCGGTTGGAAGCAAACGAGCAGCGAGTCCCAGTCAGC
CCTTGTAAACCAGTCATGGTCTCCCGACGGCTGGTACCTGTCCTCTGGGTCAGCAGACCC
TGTGATCCATATCTTCGACATAAGGTACCAGGGCCAGAAGCCCTGCCAGTCAGTGCAGGC
GCACCAGAAGCGGGTCTTTAAGGCCATTTGGCACCAGACCTTCCCAGTTTTGACCTCCAT
CTCGTCGGACCTCAACATCGCGATCCACAAATACTGATGGAAACAGCCACCTGTGGATTC
TTGGCCTGGCGGATCATCACCATTTTTGTTGCGAGCTCGCGAAAGACGGCGCGTCAATGC
CCTAGGAAATTTCTTGGTCCACGGGAATGGGATGCATCAGTGGAGCTCCAGACGAGAGGC
CCCAACGACATCTGCACTTTTTGATGCATCCGCAGGCCTCCCTGGTCGAATGTTTTGCCC
GTTGCTGCCTGTGGAGAAGTAGTACGTGCGTCGAAAACTGTTTCGGAACCATTTCCTTTC
CTCTCCTTAGCATTTTATTTTTGTTTGTTGGCAATGTAAGTCTTGGTTCAGTTGGTACTG
TGCGTTGCAATTTACAAGTGTCTGGAGATGTGATGTCCAAAGTGACAGTCTCAGTTGAAA
GAAACGTGTCCACCTGCTGTCAGCCCAAAAACTTGTGTGGTCTGAATCTCATACTCTATC
AGTGGTTAGTGAGTTAGTTGTCCAGCAGAACTTGACAGGTGGCGTGCTGCATTATTTGAG
TTTTTTTTATC

Homology of Contig U35_20347 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63470.1	542	1e-108	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi1g01487.1	541	6e-116
Arabidopsis v10	AT5G50970.1	512	6e-84	transducin family protein / WD-40 repeat family protein \| chr5:20736377-20739132 FORWARD LENGTH=512