barSeed - Barley Seed Development Database

Probe CUST_28949_PI390587928

Source Contig U35_32321

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28949_PI390587928	Hv_44K_v2	AAGAGGTCGATTCTTTCAGGGGACGACGTACGTACGTCGATGGAGATCGAGGAGGACTCC	193	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358660	2931	6e-24	143 - 201	100	59 / 59	plus	ABC20215
MLOC	MLOC_12526.2	1907	7e-23	161 - 220	98	59 / 60	plus	None
MLOC	MLOC_12526.1	2903	7e-23	189 - 248	98	59 / 60	plus	ABC20215
JLOC1	JLOC1_8406.2	2889	4e-23	144 - 203	98	59 / 60	plus
JLOC1	JLOC1_8406.1	3089	4e-23	282 - 341	98	59 / 60	plus
Harvest35	U35_32321	476	3e-25	194 - 253	100	60 / 60	plus

Contig Sequence (476 bp)

>U35_32321 476 Hv_44K_v2
AATTTATTCCGCTCCAACCAACTTAACCGGAGACGCCTCCGCCTTCCATCTCGGCAGAGG
CGAGCTCAGTCCTCACTCCACGCCCGCGTCTCCTGCTGTCTCCTCCTCCTCCTCGCCCGG
TTCCTCGGATCATCAACGTCTCCCTCCCCATGGCTTCTCCGAGGCACTCTCTTTGATTAG
GAGGGAGGGCGGGAAGAGGTCGATTCTTTCAGGGGACGACGTACGTACGTCGATGGAGAT
CGAGGAGGACTCCGGCGAGACGGCGCCGGAGATGGAGGTGAGCACGGTGGCCATCGCGGT
GAGCGGGAGCAGGAGCAGCAGGCACGCGCTCAGGTGGGCCCTCGACAAGTTCGTGCCCGG
CGGGAGGGTCCTCTTCCGGATCCTGCATGTCCGTCCGCCCCTCACCATGGTGCCCACGCC
AATGGGCAACTACATCCCGGTCTCGCAAGTGCGCGACGACGTAGCTTCGGCGTACA

Homology of Contig U35_32321 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None