barSeed - Barley Seed Development Database

Probe CUST_28944_PI390587928

Source Contig U35_32325

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28944_PI390587928	Hv_44K_v2	AGATATAATGCAGCTGCTGGTGAAGGAACAGCACTTTGTGGAATATTTTCTGAAATACAC	343	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361972	4581	2e-24	313 - 372	100	60 / 60	plus	ABC12365 ABC44521
MLOC	MLOC_27639.3	395	2e-24	279 - 338	100	60 / 60	plus	None
MLOC	MLOC_27639.2	330	2e-24	176 - 235	100	60 / 60	plus	None
JLOC1	JLOC1_18645.1	314	8e-25	199 - 258	100	60 / 60	plus
Harvest35	U35_32325	403	3e-25	344 - 403	100	60 / 60	plus

Contig Sequence (403 bp)

>U35_32325 403 Hv_44K_v2
CCAAACCCCAACTAAACCAAACCCCGCCGCGCACCGTTCCCCACTGCCCGCCCCCCCTAC
TTGCGCTCTAGGGTTTTCCGCCGTCCCCCGCCCCTCCTCCCCGCAGAGGCGCGGCGCTCC
GATGATGGCGTGGGCGGAGGACGAGGCCATTGGCCCCGACGTCGCCTCGGCGGGGCTGCA
CGTCTCGGAGCGGATCGGCCGCGACGCCGCCGCGCAGCCCGACCTGGAGGAGGCGCTCGA
GGCCTCGCGCTACGCCTCCCACCCTTACTCCTCGCACCCCAAGGAGTGGCCTCCTCTGGT
GGAAGTTGCAGAAACTCGGCAGCTTCCTCCTATGCTGATTGAGAGATATAATGCAGCTGC
TGGTGAAGGAACAGCACTTTGTGGAATATTTTCTGAAATACAC

Homology of Contig U35_32325 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g20090.1	1476	5e-56	protein\|NUP155, putative, expressed
Brachypodium v1_2	Bradi1g69510.1	1463	1e-56
Arabidopsis v10	None