barSeed - Barley Seed Development Database

Probe CUST_28943_PI390587928

Source Contig U35_18032

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28943_PI390587928	Hv_44K_v2	AAGCTTTTGGAAAGATCCGTGCAATGTATGATGACCGTGGAAGTCTCGTAGACCAAGCAA	919	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360218	1395	2e-24	68 - 127	100	60 / 60	plus	ABC07428 ABC40257 ABC49728
MLOC	MLOC_64198.1	2266	2e-24	83 - 142	100	60 / 60	minus	None
MLOC	MLOC_64198.2	2354	6e-24	1 - 59	100	59 / 59	minus	None
JLOC1	JLOC1_42125.1	2696	8e-25	2304 - 2363	100	60 / 60	plus
Harvest21	ABC52928	398	3e-25	251 - 310	100	60 / 60	plus
Harvest21	ABC08359	1058	3e-25	500 - 559	100	60 / 60	plus
Harvest35	U35_18032	1481	3e-25	920 - 979	100	60 / 60	plus

Contig Sequence (1481 bp)

>U35_18032 1481 Hv_44K_v2
GCTGTTAGGGTTGAGATCCTTGAAGTTGGTGAAGAAGGTATGGATATTGACGAATTAGCA
TATCAACTGGCAGTTGGCGAATCAGAAATTCTGCGTTTTTTATCAGTGAGAGGAGCAATG
CTTGACAATGTTCAGACTCTTGATAAAGATTTGGTTAAGATGGTTTGCATGGAATATGAA
GTTGAAGTACTGGAAAGTGGTCCAGTGAGAGTGGAAGAAATGGCAAAGAAGAATGAGTTC
CTTGATGATGAGGATTTGGATAAACTGGAAATAAGGCCTCCCATTGTAACTATCATGGGT
CATGTCGATCATGGGAAGACTACTCTTTTGGATTATATACGCAAGAGCAAGGTGGTGGCA
TCTGAAGCTGGTGCAATAACGCAAGGAATTGGAGCATATCAGGTTCTTGTGCCAGGTGAT
GGAAACCCTCAGGCTTGTGTTTTTCTTGATACTCCAGGGCATGAGGCGTTTGGTGCAATG
AGAGCTCGAGGAGCAAAGGTAACTGATATCTGTATCATTGTTGTCTCTGCGGATGATGGC
GTTCAGCCACAAACAAATGAGGCAATTGCGCATGCAAAGGCAGCCAGAGTCCCTATTGTA
ATAGCTATAAATAAGGTAGACAAGGAGGGTGCTAATCCAGAACGAGTCATGCAAGAACTT
TCCCAGATTGGACTTATGCCAGAGATGTGGGGTGGTGACACCCCGATGGTTCAGATAAGT
GCTCTTAAGGGAGAGAATGTTGATGAGCTATTAGAGACCGTCATGCTTGTTGCTGAGTTG
CTAGAATTAAAAGCGAACCCTCATAGAAATGCAAAGGGTACGGTTATTGAAGCATGTCTT
GACAAGGCCAGAGGACCTCTTGCCACCCTAGTTGTACAGAATGGAACCTTGAATAAGGGC
GATATTCTTGTTTGCGGTGAAGCTTTTGGAAAGATCCGTGCAATGTATGATGACCGTGGA
AGTCTCGTAGACCAAGCAACGCCATCCAACGCCGTGCAGATTATTGGCTTGAACAATGTA
CCCCTTGCTGGTGACGAATTTGAGTCTGTCGATGACCTTGATGTTGCACGCGAAAGGGCA
AACGCACGTGCCGATGCAATGAGAATTGAAAGGATACATGCGAAAGCAGGGGAAGGAAAA
GTCACTCTCTCATCCATTGCAGCCTCCGTTTCATCTGGGAATCAAGCAGGGATTGATACG
CATGGGTTAAATGTCATACTTAAAGTTGATTTTCAGGGTTCAATTGAGGCCATTAGGCAA
GCCATTCAAGCACTGCCTCAAGAAAATGTCTCCTTGAGATTCCTACTTCAAGCTCCAGGA
GACGTGAGCCTCAGTGATGTTGATCTGGCTGTTGCTTCGGAAGGAATTGTATTTGGTTTT
AATGTCAAAGCTCCGGGATCAGTTAAGAAATATGCTAAGCAGAAAAGTGTGGAGATTCGA
TTGTACAAAGTGATATATGATTTGATAGATGATTTACGCAA

Homology of Contig U35_18032 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g49970.2	548	protein\|translation initiation factor IF-2, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g20520.1	966
Arabidopsis v10	AT1G17220.1	1026	\| Symbols: FUG1 \| Translation initiation factor 2, small GTP-binding protein \| chr1:5885383-5890165 FORWARD LENGTH=1026