barSeed - Barley Seed Development Database

Probe CUST_28937_PI390587928

Source Contig U35_18035

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28937_PI390587928	Hv_44K_v2	GTGCAACTCGTCTGAATATAACTGAGCTATCATGACGCACTTGGTATAAAAGTACCTTTG	807	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.408	1.711	1.155	0.896	0.336	0.388
Raw	822.657	1577.999	926.830	1138.198	149.251	186.916

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_8811.3	1869	4e-23	1757 - 1816	98	59 / 60	plus
JLOC1	JLOC1_8811.2	1866	4e-23	1754 - 1813	98	59 / 60	plus
JLOC1	JLOC1_8811.1	1856	4e-23	1744 - 1803	98	59 / 60	plus
Harvest35	U35_18035	901	3e-25	808 - 867	100	60 / 60	plus

Contig Sequence (901 bp)

>U35_18035 901 Hv_44K_v2
GAAAATAGATGCAGTTCATGATCCAAATGTACCACTTCATGTTGAGGAGATTCCTGAAGA
AGAGAAAAGTGCCGGTCCGCGAGACCGTTTGGTTCACGTCGTCCACTTCTTCAAAGATAA
CCAGCACATTCAATACTACGGAGTGCCCTTCTTCTTCCTTATTCGTGAGGGCGAGGCTTT
ATCAGATATCAAACTGCGCATTCAGAAGAAATTTGAGGTTCCAGACGAGCAGTTTCTTAA
GTGGAAATTTGCTTATGTTGCCTACAATCGCCCGGACTATCTCCAAGATTCAGATATTGT
ATTGAGCCGATTCCAGAAAAATATTTATGGAGCATGGGAACAATCCCTAGGACTGGAGCA
CTCAGACATGCCCTCCAAAAAACCATACATGGCCAACCAGAATCGCCATTCTTTTGAAAA
GCCGGTGAAGATCTACAACTAAAGATGGTGATATTTTCAGTTCCGACCTGATGGTTCCTT
GAAACGAATGGGCAAGAATAGCATTGTTATTTATGCACACTCTGCAGATTGGTGGCAAAA
TCCATGATTATGATGTGCTTTTTGACCTGGTAGTTATACAGATGTAGAACCGGCTGTTGA
GACTTGAGAGGGTGCTGTGCTGAGTTAGTATGTGTTTGAAGGGGACGTTGCATACAGCGG
ATGTATTGTGGCTTGTCGAAAGAAAATTAACGCTGACTGTACAGGGATTGATAGTACTTT
TTTGCTTAGATAAGTTTCACTTTGTAAGAAAAAAAAAAAACAGTGATTTTTTGCATCGGT
TGGTTACCTTAGCTGTTGAAATATTCTGTGCAACTCGTCTGAATATAACTGAGCTATCAT
GACGCACTTGGTATAAAAGTACCTTTGAAAAAATAAGATTATTTAAAAAAAAAAAAAAAA
A

Homology of Contig U35_18035 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g56490.1	1111	3e-57	protein\|ubiquitin carboxyl-terminal hydrolase, putative, expressed
Brachypodium v1_2	Bradi2g51255.1	1086	3e-76
Arabidopsis v10	AT3G11910.1	1115	3e-52	\| Symbols: UBP13 \| ubiquitin-specific protease 13 \| chr3:3761758-3770290 REVERSE LENGTH=1115