barSeed - Barley Seed Development Database

Probe CUST_28935_PI390587928

Source Contig U35_18036

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28935_PI390587928	Hv_44K_v2	TCTTCTCTAAGACTGATGCTACTCATGCAAAGCCCTTGGCTGATGTTCTTGCAAACAGTG	1541	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.312	1.210	1.032	0.895	0.376	0.451
Raw	1733.417	2572.186	1866.983	2655.116	379.263	493.529

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74447.3	1085	2e-24	780 - 839	100	60 / 60	plus	ABC08622
MLOC	MLOC_74447.1	2001	2e-24	1574 - 1633	100	60 / 60	plus	ABC08622
JLOC1	JLOC1_49607.1	1988	8e-25	1559 - 1618	100	60 / 60	plus
Harvest21	ABC08622	1881	3e-25	1542 - 1601	100	60 / 60	plus	ABC08622
Harvest35	U35_18036	1881	3e-25	1542 - 1601	100	60 / 60	plus

Contig Sequence (1881 bp)

>U35_18036 1881 Hv_44K_v2
GGTGCGAGAGCAGAGGAGCCGGAGGTTCTTTCTAGGTTTTAGCGCGGGTGCGGCGGCGCG
GTCCTGCCGTTGCGTGTTAGGTTTGCCGGAGCAAGCGAGCGGGATGCCCAAGGGCGACGA
TGCGCTGGCGCGGAAGCGCGGGAAGGTGCGCCGGAAGCGGATGCGCAGCAGCGAGAACGC
CGTCTCCACGCGCGTCGCCGCCATCATCGCCTCCAAGCGCCGCCGCAAGACCGGCAAGCG
CCGCGGCTGCGAGGGCATGTGCTTCTCCCTCCCTTGCCCCGAGGACCCCTTCAATGAGCG
CCACGGCAAGAAGCGCAGGACCGAAGACGCCGCCGACACCAACGACGACCACGAGAAGAA
GAAGAGCAAGGATTCCAAGAAGCGGCCGCTGGAGAGGGCCACCGGTTCTAATGCCATACC
CGTGCGGAAGAAGGAGACGGAGGAGGACCGGGTGGAGTATGACCGGCCGTCCAAGTTCCT
GGTGGTCTGCCTCAACGCGATCCGGGACGGGGCGGTGGCATCCGAGGAGGACGGCGGCGG
CATCCACGACTCTGCCTCCTGGGGCATGGAGCTCTGGAAGTCCTGCGCGGCGTCCCCGCC
TTCGGACGTGCTCGACACCAGCCACCGGTACGCCACCCGGCAGCAGACGGCGTGGCTCGT
CTCCACGGCCTGCGACATCGTCGCTAGGAAGGAGAAGCTCGGAGTGGTCGTCTCATGCCC
CTTCCTCCTCTACCTCGTCCCTTCCCAGGAAAAGGCGGTGCAAGTGCGTTCAATGTGTAA
ACCGCTGAAGTCTCTTGGAATACATTCAGTGAGCTTGCATCCCGGTGCTTCCATTGAACA
CCAGATTTCTGGACTAAAGAGCTGTGAGCCCGAGTTTCTTATATCTACCCCGGAGAGGCT
CCTTGAACTGGTTTCACTAAAGGCAATCGATATATCGAATGTATCAATGCTGGTCATTGA
TGGACTAAAGGGATTCATGGACCTTAATATCATCAAAGAACTTCGTTCTATTCGAGGTAC
CATATCAGGTGATGCACAGGTAACTATATTTAGTGGTCAATGTGACCAGAGTGCGGCAAC
AGTGGCAAGAAATCTACTACATGGAAGAATTACAAAGCTTACCACAAATGATTCTGTTGC
TTCTCGAAGTGCATTTGTAACACAGCACGTACACTTCTGTACTAAAGAGGAGAAGACATC
AAAGGTTAAGGAAATTCTTGAGCATGTTTTAGAAAACCATGCTAGTAAGACAGCAAAGGT
TTTGCTAGTAGCCGCGAATGATAATGTAGCGCAGAAACTCTCTTCATCCCTCAAACTGGA
AATTCTCACAGTGAATGATGGCTCGCAAGGCAGCACCTTTACCGTATGCAGCAGCATGGG
GCTTATCAATGTACTTGTGAAAGGCTGTGAGAGCTTGGCAACATCAGGTGTCGAGGAATT
TGAGATTGTGTTGGTCGCGGACTTGCCTCCATCGTTTGACGATTATGTCGAGATCCTCAC
CAGGACAGCTCGTCACACGGTTGCAGGGGAGGTGCATGTCATCTTCTCTAAGACTGATGC
TACTCATGCAAAGCCCTTGGCTGATGTTCTTGCAAACAGTGGACAGGCAGTGCCTAAGTT
GCTAAGACAATTAATGGACAAGAATCACTCCTGATAGCAATATTCATTTCTACTTATGCG
GTTAATCATGATGGACGGGCAGCCAAATTAGCGGTCCGCAACTCTTCCTGTCACCAAGCA
ATTTTGTCAGCGTCCAAGTGTTTTGCCTTTTTCTTTTCCATGCAATTCTTGTGTGTCGAT
TATCTGTCGCCTTGATGTAGCACATTTAAATTTTATGAGGAATATACGACAATGCCTTTC
CTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18036 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g05230.1	529	0.0	protein\|ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi4g26640.1	522	0.0
Arabidopsis v10	AT2G28600.1	502	4e-93	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:12251845-12254672 FORWARD LENGTH=502