barSeed - Barley Seed Development Database

Probe CUST_28934_PI390587928

Source Contig U35_18037

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28934_PI390587928	Hv_44K_v2	CAAAAAAGCCCGTCTCTTACAACGGAAGAGAAAATAACGCTTTGAATGTAATATATTAGC	546	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375617	712	2e-24	555 - 614	100	60 / 60	plus	ABC08058 ABC18975
Harvest21	ABC08058	609	3e-25	547 - 606	100	60 / 60	plus	ABC08058
Harvest35	U35_18037	609	3e-25	547 - 606	100	60 / 60	plus

Contig Sequence (609 bp)

>U35_18037 609 Hv_44K_v2
CGCGTCTATCAGCCAGATCCAGTGCAAGCGACAACATATCGAGTGCTCGGAGCAAACGGC
GACCGCGCGGGCACGTGATTCGTGAAGGAAATGGCGACCATCAAAGCCAAGGTCAAGGAC
GCCGCCTCCTCCGCCAAGGCCGGCATCGATAAGGCGAAGGCCTCCGCCGGCGAGAAGGTA
CAGAAGGCGACGACCACGGACCCGAGGAAGAAGCGTGAGGCGGAGGAGAACAAGGAGGAC
CGCTTGCTCAAGGTCGACTCCGACGAGCGCGAGGAGAAAGGGGACCACGCCGCCGAGAGG
TCCGGGAGGCGCACCATCATCACCGGCACCTAGTTATAGCTTCTACCCTCTCTTTTTTTT
TAAAAACAGTTAGCTTCTACGTAGACCCTTCTCGTGAAAAAAAAAGCTTCTAGCTAGGTC
CAATAACAGCATGTAGCAGAGTATGCGTCGGTTGAAAGCGAATCGAGGCCCAATAACCGC
AGTCGTTTGAATGTAATTCGATCCTATCTCTTCTCTCCCTTTAATTTAACTAGCAAAAAA
GCCCAACAAAAAAGCCCGTCTCTTACAACGGAAGAGAAAATAACGCTTTGAATGTAATAT
ATTAGCACA

Homology of Contig U35_18037 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None