barSeed - Barley Seed Development Database

Probe CUST_28933_PI390587928

Source Contig U35_44300

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28933_PI390587928	Hv_44K_v2	ATGGACCTCGACGGCCTTATAGAGCAGGAGGCCACCGTGAAAGAGCTCGAGAACCGCCTC	115	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68007.2	2665	2e-24	948 - 1007	100	60 / 60	plus	ABC37246 ABC37284
MLOC	MLOC_68007.1	2798	2e-24	1757 - 1816	100	60 / 60	minus	ABC37246 ABC37284
MLOC	MLOC_68007.3	2818	2e-24	1892 - 1951	100	60 / 60	minus	ABC37246 ABC37284
JLOC1	JLOC1_44960.2	2648	8e-25	954 - 1013	100	60 / 60	plus
JLOC1	JLOC1_44960.1	2606	8e-25	874 - 933	100	60 / 60	plus
Harvest21	ABC41919	431	3e-25	116 - 175	100	60 / 60	plus
Harvest35	U35_44300	431	3e-25	116 - 175	100	60 / 60	plus

Contig Sequence (431 bp)

>U35_44300 431 Hv_44K_v2
AGCAACCTCTGCATGGGAAACGGAGCACGATAAGCTGGAGAAGGAGGAGGTGGAACGATT
CAAGGAGCTGTGGCTGTCGCTCGTGGAGCGGGAGCAGAGGCTGGAGCTCCGGCTGATGGA
CCTCGACGGCCTTATAGAGCAGGAGGCCACCGTGAAAGAGCTCGAGAACCGCCTCGGCCT
CGCCGCCGTGGAGGCGCGGCTCCTGGAGCTCAAGGTCTTGTCGCTGCGTGAGGAGAACGA
GAGGCTCAAGGACCAGGCGGCGGAGCTGGAGGCCGTCCGGGCTCAGCTGGGTCGCGCCAA
GGAGAAGCTGCGGGCGCTCAAGGAGCGGGTGAAGGTCGAGCGGGAGGAGTCTCAGAGCGA
GGCGGCGATGCTCCGGGACAAGGTGATGGGGCTGGAAAAGACCGGCGAGCAGAGGGAGAG
GGTGCTGGCGG

Homology of Contig U35_44300 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None