barSeed - Barley Seed Development Database

Probe CUST_28926_PI390587928

Source Contig U35_20350

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28926_PI390587928	Hv_44K_v2	TGGCTTGGTTTAGAGGTCACTGATTGTTGGTTCATACTACCTGACTTGCAACGGAAAAAA	1445	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.671	1.729	1.204	0.747	0.380	0.425
Raw	707.942	1126.916	705.175	671.175	122.419	147.708

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_49086.3	1911	1e-22	1780 - 1835	100	56 / 56	plus
JLOC1	JLOC1_49086.2	2073	1e-22	1942 - 1997	100	56 / 56	plus
JLOC1	JLOC1_49086.1	2081	1e-22	1950 - 2005	100	56 / 56	plus
Harvest35	U35_20350	1516	3e-25	1446 - 1505	100	60 / 60	plus

Contig Sequence (1516 bp)

>U35_20350 1516 Hv_44K_v2
CTTCTACGTACGCCTCTATAATGAGGGTGTTGCAGGACCGGAAATATGTGACAATAAAAA
GTCGAGTTCTGCACCCTGAGTTTCGTGGTCGAATGGTCTCAGCATTTCTTTCACATCTTT
TCTCTGAGATTGCTGATTACAGCTTTACTGCTAACATGGAAACGGAGCTAGACAATGTCT
CTGCCGGGTCAACTGAATGGAAGGGCCTCCTGACAAATTACTGGGAACGATTCAGCAAAT
ACTGCACAGATGCTAGTCAATGGGATGTTAGAAAGGTAGAGAGAATGCTTGAAGAGAAAT
TCCTTCCTACCCTCTTTCCTGACCTTGACACAGATAGTAGGATTTGCCCTAGTTGTTCTG
AAGGAACCCTGAGATTCAAAGTTAGTAGGTACGGCGAAGGCTATTTTATAGGCTGTGATC
GACATCCGAAATGCAAGTACATTGCCCGCACATTATCAGATGAAGATGATGAAAATGAAA
CCTCCGAGGAAAATCCTAAGTCTTTTGAACCTCGGCTACTTGGTGTCAAGCCTGATACAA
ACGAAAAGGTCTTCTTAAAACAAGGTCCTTATGGTTACTACATCCAGGTCGGAGAGGATA
GGAAAGGAGTGTCCCAGAAAAGAGCTCCTATTTCCGAGGTCAAAGATGTTAACTCTATCA
CCATCGAAGATGCAATTGAGCTATTGCAGTATCCAAAAGTTCTGGGGAAACATCCTGATG
ATGAGCATCCTGTACTTATGACACATTCTAAAGCTGGATTTAGCGTCCGGCACAGGAGAA
GCCTTGCTCCAGTGCCAAAGACTCAGGACCCAAAGAAGGTTACACTTGAGCGTGCACTGA
AGTATCTGACGGGTAAAAATGTCAAAAAGTTTGGACGGCCAAAGGGAAAATCTAACAAAA
ATGCAGAACCCATTGAATGGCATTAAGCGATCAGCTGTCACAGACGCAATGTGGAAACTT
GCACAGGCTCCGAATAACAAAGGTCAATGTCAAGCTCGTGCACAAAATTCAGAGTGGATC
AGTGGTAAGAATGAGCAGTCAGTGTTTATTCAAGTGGTTATGTATGCCTAGCTGCTGCCA
ATAATTCCCGGCAATGCTTTTTGATGATGATGGGCCTCCATGCGTGAAAGGACAGCTGGT
CAACTCATAAGCATATAAAACATGTGCGCAGGTGCTCATGTCTTTTGAGTTGTATTTCTT
GCTGGATTTCTCCATAATCCCGCATAAGAAAGAGAAATGATATACACGCAGACGAGCAAC
ATCTCTCTGCCCTTCATTTTTTTATGGGTCACCGTCAACAGCTGTATAGAAAACACAGAT
GACGGGCAACTTACCACAACATTATATACACCCATAGTTTTTTTTTTTTGCCACTTCCAT
TTTGTTTCTTTGCTAATGTTGTCATGAAATTTTGCCAATAATGTAAAATTTAAAGAGAGT
TGTTGTGGCTTGGTTTAGAGGTCACTGATTGTTGGTTCATACTACCTGACTTGCAACGGA
AAAAAAAAAAAAAAAA

Homology of Contig U35_20350 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g16980.1	1164	1e-166	protein\|DNA topoisomerase I family protein, expressed
Brachypodium v1_2	Bradi1g43607.1	878	9e-177
Arabidopsis v10	AT4G31210.1	1284	2e-113	DNA topoisomerase, type IA, core \| chr4:15165280-15172534 FORWARD LENGTH=1284