- Probe CUST_28922_PI390587928
- Source Contig U35_20354
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28922_PI390587928 | Hv_44K_v2 | GATAAGGAATCAAAGTGGAAACAGCTGCGGCAAGCATTCAAGTCCAATAATCTTCCCGCA | 868 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.594 | 0.711 | 1.186 | 1.208 | 1.000 | 1.089 |
| Raw | 18.334 | 33.127 | 51.763 | 77.466 | 23.299 | 29.309 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_14781.4 | 2334 | 7e-23 | 1007 - 1066 | 98 | 59 / 60 | plus | ABC11312 |
| MLOC | MLOC_14781.8 | 2076 | 7e-23 | 1127 - 1186 | 98 | 59 / 60 | minus | ABC11312 |
| MLOC | MLOC_14781.7 | 2287 | 7e-23 | 1152 - 1211 | 98 | 59 / 60 | minus | ABC11312 |
| MLOC | MLOC_14781.6 | 2285 | 7e-23 | 1152 - 1211 | 98 | 59 / 60 | minus | ABC11312 |
| MLOC | MLOC_14781.2 | 2355 | 7e-23 | 1404 - 1463 | 98 | 59 / 60 | minus | ABC11312 |
| MLOC | MLOC_14781.3 | 2534 | 7e-23 | 1515 - 1574 | 98 | 59 / 60 | minus | ABC11312 |
| MLOC | MLOC_14781.5 | 2387 | 7e-23 | 1335 - 1394 | 98 | 59 / 60 | minus | ABC11312 |
| MLOC | MLOC_14781.1 | 5074 | 7e-23 | 3202 - 3261 | 98 | 59 / 60 | minus | ABC11312 |
| JLOC1 | JLOC1_10100.2 | 2943 | 4e-23 | 1063 - 1122 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_10100.1 | 2803 | 4e-23 | 923 - 982 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC13443 | 932 | 3e-25 | 869 - 928 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_20354 | 932 | 3e-25 | 869 - 928 | 100 | 60 / 60 | plus |
Contig Sequence (932 bp)
>U35_20354 932 Hv_44K_v2 TCTTTTCCATCCAGAGAGGATTGCTTCAGGTTATCCTTCTTCCAGCGCTTTCCTCACACC CCCATCGCCGCCGAAATTCCCGACCTTTTCTAGCGGCAAAACCGTTGAGTGCGGCGGCGG CGACCGCCGACCGAGCCAAAGAATCCAAGGATTTCCTTCTGGCGAGCTAGGCCTTCTCCT GGGGCCGTTTCTTGGGAGCCATATTTGGTTCCGGATCCATGCCGGCCGACCACATCTTGG GCCCCCCTTTCCCCGCCTAGTATTATTGTCCTCGCGAGGGTTTCTTGGTTCCTCGGAGGC CCTCCCAAGTTCTTGCCAATCTGGGCAATCTGGCCCCAACCCCGGGGTGCGGCTGTGTTA GGGTTCGGGGGGCTGGATGGGGTCGGCCGGGAATGTTGTGGAGATCAGCTCCGACGAGGA GGACGTTCCCATGCCCAGGAAGCCGGCTGCCGACTGGCTTGGGAAGCTTTTGAACGATGA TGAGCCAGATGAGGACGACTTATTTGATCTCGTGGTGATGGGTGAGTTCTCCCCGCCACA AAAGAAGGGCAACCCCGGTGGCGGTGATGAGGATGATGATGATGATTGTGTGGTTCTAGA CGGTGACCCTGATAAGGTGATTACCATCGGGGAGGACAAGGGGAGTGCGGGAGATAGCAG CTCGGACGAATTGCAGATAGTTGGGGAGAAAGGACCGGTAGCGTGCAGGGACTTCCCTCA TTCGCGCCATCTATGTTCTAACTTGCCCTTCAACGCTACTTCTCATGTGAAGCATTGTAG CATGTGCCACTGTTTTGTATGTGATGCTCCAGCTCCATGTAATTATTGGGGTAAAGGTAT CCAGCTTAACGATCATTGTCATGCTACGGATAAGGAATCAAAGTGGAAACAGCTGCGGCA AGCATTCAAGTCCAATAATCTTCCCGCATCTC
Homology of Contig U35_20354 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g32850.1 | 554 | 1e-54 | protein|expressed protein |
| Brachypodium v1_2 | Bradi3g28250.1 | 571 | 3e-70 | |
| Arabidopsis v10 | None |