barSeed - Barley Seed Development Database

Probe CUST_28917_PI390587928

Source Contig U35_20359

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28917_PI390587928	Hv_44K_v2	GGATTCTTTTGTACTACTAAGATATGATGTCAAGGCAAATGTATATTGCTTTTGACCCCA	787	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.203	1.740	2.717	1.089	0.330	0.289
Raw	3950.537	8748.633	11804.270	7400.247	773.950	754.278

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65752.1	1056	6e-24	957 - 1015	100	59 / 59	plus	ABC14515
MLOC	MLOC_65752.2	376	6e-24	300 - 358	100	59 / 59	plus	ABC14515
JLOC1	JLOC1_43289.1	912	3e-24	813 - 871	100	59 / 59	plus
Harvest21	ABC14515	850	1e-24	765 - 823	100	59 / 59	plus	ABC14515
Harvest35	U35_20359	888	3e-25	788 - 847	100	60 / 60	plus

Contig Sequence (888 bp)

>U35_20359 888 Hv_44K_v2
CACTCCTCCACTCCTCACTCTCCTCACTCCTCCACTCCTCACTCCTCACTCCTCACTCCT
CACTCCTCACTCACCATCCCCAGTCCCGATCCACCCCACCAAGCAAGCAAATCCCTCTCG
ATCCGACCGCGAGCCAACTCCCGCCGGCCGAGATGGCGTCCGGCAAGGTGCACACGCACA
AGGCGTTCCTCCTCTGCAACTACGCGCTGCTGGGCGCGGCCTCCAGCTGCATCTTCCTCA
CGCTGTCCCTCCGCCTCCTGCCGTCGCCCTGCGGCCTGCTCCTCATCTTCCTCCACGCGC
TCACCGCCGTCTTCTCCGCGGCAGGGTGCTCCGGCTCCTTCACGGCCGGCCCGGCAAACC
CGGCGCCCTGGCACACCGCGCACACCGCCGGCGCCGCGCTCACCGCCATCTTCCAGGGCG
CCGTCGCGCTCCTCGCTTTCACCCGCACCGCCGACTTCCTCGCCGAGCTCCAGTCCTACG
TCCGCGACGACGACGGCGCCGTCATCCTCAAGATGGTCGGCGGGCTCGGCACCGCCATCT
TCGTCCTCGAGTGGGCCGCCCTCGCGCTCGCCTTCTCCCTGCGCCTTGACGAGGACGACG
ACGGCGAGGACGACCTCCGCCGCGCCAAGAACTGGGCCGACGCCTACCATGTCTGAGCGG
CGAGCCTCCGCGCTCACCCGCTGGAGCGGCGGGCGACCGGTGCCTCCATCCAAGATGTGT
CGATTTGGTGTTATTGCTGTCGCTATTCTTTTGTGCTAGTGCCTAGTACTGTGCCTACCG
AGATCTCGGATTCTTTTGTACTACTAAGATATGATGTCAAGGCAAATGTATATTGCTTTT
GACCCCATTTAATGGAAAAAAATATCATTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20359 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67110.1	167	3e-60	protein\|expressed protein
Brachypodium v1_2	Bradi2g57580.1	162	2e-57
Arabidopsis v10	None