barSeed - Barley Seed Development Database

Probe CUST_28904_PI390587928

Source Contig U35_18046

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28904_PI390587928	Hv_44K_v2	CCATCCTTGTACCATTGTTTGTTACTGGAGATTTGATTTGATTAATGGTGAACTACACTT	843	GeneList: turquoise MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.240	1.557	1.166	0.881	0.335	0.403
Raw	850.323	1705.547	1116.628	1331.057	177.926	231.601

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252929.1	3034	2e-24	2972 - 3031	100	60 / 60	plus	ABC12244
MLOC	MLOC_9784.1	1628	2e-24	6 - 65	100	60 / 60	minus	ABC12244
JLOC1	JLOC1_6346.1	1823	8e-25	1592 - 1651	100	60 / 60	plus
Harvest21	ABC12244	933	3e-25	844 - 903	100	60 / 60	plus	ABC12244
Harvest35	U35_18046	933	3e-25	844 - 903	100	60 / 60	plus

Contig Sequence (933 bp)

>U35_18046 933 Hv_44K_v2
ACCATGTTTGATGCCCCTAAAGGTACCGACCCTGTTGCCATCTATCTTGGGAGCATGGGA
AAGGGGCAGGCTTGGGTGAATGGGAATTTAATTGGACGCTACTGGTCAATAGTAGCGCCA
GAATCTGGGTGCCCATCTACATGCAACTACCCAGGAGCGTATAGTGAGAGCAAATGTCAA
TCAAACTGTGGAATGCCGACACAAAGCTGGTACCACATACCACGAGAATGGCTGCAGGAG
TCGGACAATCTTCTGGTATTGTTTGAAGAAACAGGGGGTGACCCCTCGAAGATATCACTG
GAGGTTCATTATACCAAAACAATCTGCTCAAGGATATCAGAAAGTTATTATCCTCCCCTT
TCTGCTTGGTCACGCCTTACCAGTGGTCATGTCTTGGTTGATACTATAGCACCAGAACTG
CGCTTACGGTGTGATGATGGGCATTTGATCACTAAGATTACATTTGCGAGCTATGGAACT
CCGTCAGGTGGTTGCCAGAACTTCTCCATAGGAAAGTGCCATGCTTCAAGTACTCTTGCC
TTGGTATCAGAGGCGTGCGTGGGCAACAGCGAATGCACAATCAGTGTTTCGAACGATATA
TTTGGTGATCCATGCCCACGAGTTGTCAAGGATTTAGCAGTTGAGGCTGAGTGCTCGCCG
TCATCAGCCACCAAAGAAGCTCGAGACGAGATGTGATGTGGAATTCTCGTGACAAGCTGG
TGCAAGGGAGCGTTTCGCTCGATCCATAGTTGTTCGTGGTGTTGGTGTAAAGATAATCCT
ACTAGTGAAGAAATAAGGACAGCAAAACAAACAAACAAACAAACACATACCACCCCTATT
GTGCCATCCTTGTACCATTGTTTGTTACTGGAGATTTGATTTGATTAATGGTGAACTACA
CTTCGGAAAAAAAAAAAAAAAAAAAAATAAAGG

Homology of Contig U35_18046 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g24170.1	928	7e-131	protein\|beta-galactosidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g07990.1	909	4e-138
Arabidopsis v10	AT2G32810.1	887	1e-85	\| Symbols: BGAL9 \| beta galactosidase 9 \| chr2:13919410-13925325 REVERSE LENGTH=887