barSeed - Barley Seed Development Database

Probe CUST_28897_PI390587928

Source Contig U35_17052

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28897_PI390587928	Hv_44K_v2	AATAGGCCAAGCAGGGCTCCTTTGAACTGGTAAAAGAGAGGTGATGTGAATCTCAAAAAA	1991	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.322	1.181	0.916	1.230	0.696	0.691
Raw	48.678	64.624	46.941	97.932	19.178	21.819

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12443.2	2554	9e-22	1683 - 1737	100	55 / 55	plus	ABC08278 ABC20923
MLOC	MLOC_12443.3	2551	9e-22	1680 - 1734	100	55 / 55	plus	ABC08278 ABC20923
Harvest35	U35_17052	2062	3e-25	1992 - 2051	100	60 / 60	plus

Contig Sequence (2062 bp)

>U35_17052 2062 Hv_44K_v2
TTAAAACCCCGAGAATCATCCCTACGGATTTTACGAAAATGCCCCCAGAGCTCCTCGCTT
GCCTCTTCCTGGCCCTCGTCGCCGTCTCCGCCTCCGGCGCGGCGGCGGCCCGGCGCCACC
CGGCCCCGGCGAACTCCACCGCCACGGGGAACCCGGTGTACATCTGGCCGCTGCCGAAGA
ACTTCACCTCCGGCACGCGGACCCTCGCCGTCGACCCCGACCTCGCGCTCGACCCGCGGG
GCCCCGGCGGCGGCGCCTCGGCCGTCGCCGAGGCGTTCGGGAGGTACAGGTCCCTCATCT
TCTCCCCGTGGGCGCACGCGGCTCGCCCCGCCTCGGCGGGGTACGACGTCGCCACGCTCA
CCGTCGTCGTCGCCTCCGCCGATGAGACGCTGGAGCTGGGAGTGGACGAGAGCTACACGA
TCTACATCGCGGTGGCGGGCGGCGCCAATTCCATCGTCAGCGGAGCAACCATAGAGGCTA
ATACCATATATGGAGCTATTCGCGGATTAGAGACATTCAGTCAGTTATGTGTTTTTAACT
ACGACACAAAAAATGTTGAAGTGCGCTATGCACCATGGTACATTCAGGATGAACCACGCT
TTGCCTTCCGTGGCTTGATGCTAGACACCTCAAGGCATTACCTCCCAGTTGATGTGATAA
AGCAAGTCATTGACTCCATGTCATTTTCTAAGCTGAACGTTCTTCATTGGCATATCATCG
ACGAACAATCTTTTCCATTGGAGATACCATCATATCCAAATCTATGGAAGGGTTCATATT
CAAAATCAGAGCGGTACACAGTGGAAGATGCACGCTATATTGTCAGTTATGCTAAGAAAA
GAGGTATTCATGTCATGGCGGAGATTGACGTACCTGGTCATGCAGAATCATGGGGAAATG
GATATCCAAAACTTTGGCCTTCTCTTAGCTGTACAGAGCCATTAGATGTTTCTAGTAATT
TCACATTCGAAGTAATAACTGGAATTTTGTCTGATATGAGAAAAATCTTTCCATTTGGGT
TGTTTCACCTTGGTGGTGATGAAGTATATACAGGTTGCTGGAATTTAACACCCCATGTGA
AGCAGTGGCTTGATGAACGCAACATGACTACAAAGGAAGCTTACAAATACTTCGTGCTGA
AAGCTCAGGAGATAGCAATCGATCTTAACTGGATTCCTGTAAATTGGGAGGAAACCTTCA
ACTCATTCGGAGAAAGCCTCAATCCCCGGACTGTTGTGCATAACTGGTTGGGTCCTGGAG
TCTGCCCTAAAGTTGTTGCAAAGGGTCTGAGATGTATAATGAGTAACCAAGGTGTATGGT
ACCTTGATCATCTTGATGTTCCGTGGGAACAAGTCTACACGGCCGAGCCACTTGCAGGAA
TAAACGACACAGCACAACAAAAGCTGGTACTAGGTGGAGAGGTTTGCATGTGGGGTGAGA
CGGCAGACACCTCTGATGTTCAACAAACAATATGGCCACGAGCAGCTGCGGCAGCAGAGC
GTATGTGGAGTCAGTTGGAGGCCATTTCCGCCCAAGACCTGGAAACAACCGTCCTGGCTC
GGCTACACTACTTCAGATGCCTGCTGAATCACCGTGGAATCGCTGCAGCTCCAGTCACAA
ACTTCTATGCTCGGCGACCTCCGATCGGCCCTGGATCATGTTTTCTGCAGTAAACCGATC
ATGCAAAGCGGAAGATACACACGAGGGGGTTTGGCCTTGCCTCCTTACACCCCCCACACT
CTACCAAATTGGTGTTGTCACTTCTACTGTATCATTTCCTGTAAGTTCACTCGCATCATA
TTATACACCCGTGACAATAAAAGCCCTTGATCCTTCCCCGTGTATTTCACCCCGAAACTC
TAATAAAACCCCAGCTTTGCTCGATCCGTCCGGAGAAAAGGCGGTCGCCGATGTAACAGT
ATTATTCGCGTGCCTTTTCAACAGTCGTGTTTGTTGAACACGAGTGTCCGGATCAACATT
TGCAACTGGCCAATAGGCCAAGCAGGGCTCCTTTGAACTGGTAAAAGAGAGGTGATGTGA
ATCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17052 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g02510.1	542	protein\|beta-hexosaminidase precursor, putative, expressed
Brachypodium v1_2	Bradi2g37460.1	544
Arabidopsis v10	AT3G55260.1	541	\| Symbols: HEXO1, ATHEX2 \| beta-hexosaminidase 1 \| chr3:20489317-20492858 FORWARD LENGTH=541