barSeed - Barley Seed Development Database

Probe CUST_28896_PI390587928

Source Contig U35_31346

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28896_PI390587928	Hv_44K_v2	GTATGGATTGGGTGCATACCATTCAGGTATAGAGTTGATGAAACTTCTGGTGATGAACAG	190	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.361	0.476	1.266	1.908	1.067	1.117
Raw	54.492	113.663	260.471	637.501	123.501	140.081

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC31516	677	3e-25	191 - 250	100	60 / 60	plus
Harvest35	U35_31346	677	3e-25	191 - 250	100	60 / 60	plus

Contig Sequence (677 bp)

>U35_31346 677 Hv_44K_v2
CTCCCCGTGCACCGCCGGACCCGACTTGCCTCCGACGCCGGCGAGACGGCGCGCAGGAAG
AGCGGGCGGGCGGCGGCGGCGGCGGACAAGGAGGAGGAGATCGAGCGCGGCGGGGTAGCA
TGTGCGACCTCGTGGCCCGCACGGGTCGCCACCAGCAACGCTACGAGGACGGGCGGCGGC
TCGTCGCCGGGTATGGATTGGGTGCATACCATTCAGGTATAGAGTTGATGAAACTTCTGG
TGATGAACAGAAGAAAGCCGTTGAGGTTCTCATGATAAACTCCCAAAGCGGACCAGGTTT
ATTGTTTCCAAAGGGAGGATGGGAGAATGATGAAACTGTTGAACAAGCAGCTGCTCGAGA
AGCTATAGAAGAAGCTGGAGTTCGAGGAGATATAGTGCAATTTCTAGGTTTCTACGATTT
CAAGAGCAAGACGCATCAAGACGCGTGCTGCCCCGAGGGCATGTGCAGAGCGGCGGTGTT
TGCGCTGCACGTGAAGGAGGAGCTGGCCTCATGGCCCGAGCAGAGCACCCGCCGGAGGAC
TTGGCTGACGGTCCCTGAAGCCACGTCACAATGTCGGTATCAGTGGATGCAAGAGGCCTT
GCTGACGGGCTTCTCCGAGTGGCATGATCACTGGAGCAAAAGCGACGGCGGGGGCGGCGG
CAACCCGATCTAAACGC

Homology of Contig U35_31346 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g59580.1	184	3e-92	protein\|hydrolase, NUDIX family, domain containing protein, expressed
Brachypodium v1_2	Bradi1g04590.1	183	6e-94
Arabidopsis v10	AT3G12600.1	180	4e-57	\| Symbols: atnudt16, NUDT16 \| nudix hydrolase homolog 16 \| chr3:4004809-4005995 FORWARD LENGTH=180