barSeed - Barley Seed Development Database

Probe CUST_28895_PI390587928

Source Contig U35_17053

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28895_PI390587928	Hv_44K_v2	CTTTTAGAGATTTCACTATGAACTACTCCCTCTGTTCCATAATATAAGTCTTTTTAGGGG	1411	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.655	1.695	1.279	0.849	0.478	0.492
Raw	331.936	333.412	222.681	222.281	44.835	51.691

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_45846.1	2403	4e-23	2055 - 2111	100	57 / 57	plus
Harvest35	U35_17053	1492	3e-25	1412 - 1471	100	60 / 60	plus

Contig Sequence (1492 bp)

>U35_17053 1492 Hv_44K_v2
CGCCTTCGGGGATCCCATCCCCTGGCTCATCGCGCTCGCCTTCTTCTTCGCTCGGGGGTT
CATCAAGACGGGGCTCGGGAACCGCGTCGCCTACCAATTCGTTTCGGCCTTCGGGGGCTC
CACGCTCGGCCTCGGTTACTCGCTCGTCTTTGCCGAGGCGTTCCTCGCGCCGGCAATCCC
CTCGGTCTCCGCGCGGGCTGGTGGCATCTTCCTCCCGCTCGTGAAATCCCTCTGCGAGGC
GTGTGGATCGCGCACTGACGACGGCACAGAGCGAAAGCTCGGCGCCTGGCTCATGCTCAC
ATGCTTCCAGACGTCCGTCATTTCGTCAGCGATGTTCCTCACGGCGATGGCGGCCAACCC
GCTTGCTGCCAACCTCACGCTCAGCACCATCGGGCAGGGGATCGGGTGGACGCTGTGGGC
AAAGGCGGCCATTGTGCCAGGGCTTCTGTCGCTGCTGATTGTGCCGCTGGTCCTGTATCT
CATCTACCCACCGGAGGTGAAGACCAGCCCTGACGCACCGCGCTTGGCCAAGGAGAGGCT
GGCAAAGATGGGACCCATGAGCACGGAGGAGAAGATCATGGCCGGCACGCTTCTGCTCAC
GGTTGGACTGTGGATCTTTGGAGGAATGCTGAGTGTAGATGCAGTGTCTGCAGCGATTCT
TGGCCTATCTGTGCTCCTAATTACTGGAGTTGTTACATGGAAAGAGTGTTTGGCGGAGTC
TGTAGCATGGGATACCCTTACTTGGTTTGCTGCGCTGATTGCGATGGCTGGCTACCTCAA
CAAATATGGATTGATTTCTTGGTTCAGCGAGACTGTTGTTAAGTTTGTTGGAGGTCTCGG
TCTGTCCTGGCAACTCTCATTCGGTGTATTGGTGCTGATGTACTTCTACTCCCACTACTT
CTTTGCTAGTGGTGCTGCACACATCGGAGCGATGTTCACTGCGTTCCTGTCTGTGGCAAG
TGCCTTGGGCACCCCTCCGCTTTTCGCTGCCATGGTTATGTCATTCCTTTCAAACCTCAT
GGGTGGCCTGACCCATTATGGCATAGGGTCAGCCCCCGTCTTCTATGGAGCGGGCTATGT
TCCGCTGGCTGAGTGGTGGGGCTATGGATTTGTCATCTCCGTTGTTAACATCATCATCTG
GCTTGGTGCTGGAGGCTTCTGGTGGAAGATGATTGGTTTGTGGTGAGAAACACAGTAAAT
GTGGGACTTCCTATTTCGACGAGGGCGAACGAAACGAGCAAAACATTTGCAAGTGGCACA
GGTTGAGCTGACCACAAGTTTTGTCGACATGATCCATTCTTTTAGTTTGTACCCGTACAA
TTGTTTTTCTGGCAGTTACTGGCAAGTGGTATCTGATGTTAAAAAAAAAAAAAAATTTAT
TTTATACTCCCTCCCTTCCTAAATATAAGAGCTTTTAGAGATTTCACTATGAACTACTCC
CTCTGTTCCATAATATAAGTCTTTTTAGGGGTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17053 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g33080.1	549	protein\|2-oxoglutarate/malate translocator, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g06300.1	562
Arabidopsis v10	AT5G12860.1	557	\| Symbols: DiT1 \| dicarboxylate transporter 1 \| chr5:4059927-4061919 REVERSE LENGTH=557