- Probe CUST_28882_PI390587928
- Source Contig U35_29031
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28882_PI390587928 | Hv_44K_v2 | CATCTCTCTTTTGCTTGCCCTAATAAGAAGGTTTCTGAAGTCATATCTAGTGAAAATAAG | 17 | GeneList: skyblue3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.479 | 1.027 | 1.242 | 0.849 | 0.314 | 0.376 |
| Raw | 73.632 | 73.756 | 84.097 | 91.301 | 11.412 | 15.360 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_51002.1 | 1926 | 2e-24 | 1016 - 1075 | 100 | 60 / 60 | minus | ABC13454 |
| JLOC1 | JLOC1_32544.1 | 2394 | 8e-25 | 1313 - 1372 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28187 | 494 | 3e-25 | 18 - 77 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29031 | 494 | 3e-25 | 18 - 77 | 100 | 60 / 60 | plus |
Contig Sequence (494 bp)
>U35_29031 494 Hv_44K_v2 ACGAGGGCACTCCTGGCCATCTCTCTTTTGCTTGCCCTAATAAGAAGGTTTCTGAAGTCA TATCTAGTGAAAATAAGGATAATGTCGATTCAGCTGAAGCATTGTCCAAGAAGAGGCGCA CTTGTTATGAATGTGGCGTTCCTGGCCATATATCGTCAGCTTGCCCCAACAAAAAGACTT CTGAAGTCATAGCTGATGAATATAAGGCCAATATCGACTCAGCCACAACATCGTCGAAGA AGAGACGGACATGCTATGAATGTGGCGTTCCTGGTCATCTATCATCTGCTTGCCCAAATA AAAGTGCTCCTGAAGTCATAGCTGATGAATATAAGGCCAATACTGACTCAGCCACAACAT CGTCGAAGAAGAGACGGACATGCTATGAATGTGGCGTTCCTGGCCATCTGTCGTCTGCTT GCCCAAATAAAAGCGCCCCTGAGGTTGTTTCTAACTACACACAGCCTTTTGATGAACCGA AGTATGCACCTTAC
Homology of Contig U35_29031 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g02400.1 | 549 | 1e-53 | protein|RNA recognition motif containing protein, expressed |
| Brachypodium v1_2 | Bradi2g37420.1 | 621 | 2e-67 | |
| Arabidopsis v10 | None |