barSeed - Barley Seed Development Database

Probe CUST_2886_PI390587928

Source Contig U35_16336

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2886_PI390587928	Hv_44K_v2	CTACTCATATTATGGCAGCGATGCCTGTAACAGTCGAGAGTTGTTGAGGTTTGTAAAAAA	2801	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.245	1.471	1.221	0.824	0.364	0.348
Raw	4960.693	9265.767	6649.013	6933.193	1086.653	1137.465

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39098.1	2436	3e-22	2330 - 2385	100	56 / 56	plus	ABC04846 ABC04847
JLOC1	JLOC1_25478.1	2506	1e-22	2330 - 2385	100	56 / 56	plus
Harvest21	ABC04846	2900	3e-25	2802 - 2861	100	60 / 60	plus	ABC04846
Harvest35	U35_16336	2900	3e-25	2802 - 2861	100	60 / 60	plus

Contig Sequence (2900 bp)

>U35_16336 2900 Hv_44K_v2
TGCAGGCAATTCTGCACGAGGAGACTTTGGAAAAAGGGAGAAAAGTTATCTGAGAGGGAA
GAAAAAGCTAGTACAAGAGAAAAAATGGGGCTTCAGAAGCTTATCAAGGATCACGAGGTG
AAGCTTGAAGCAAAAAGACGAGATTTTGAATTAGAGCTGGAGAGTGAGAGGAAATCCTTT
GAGGAAAAGCTGAAACATAGGGAAGCTGATTTGGTAAAGAAGGAAAAAGATCTCAGTTCT
CGTGAGAACATAATATCTAAAAGGGAGCAAGCATTAAATGAAAGCATGAAAAGGCTGGAA
GATTTGCAGATTGACCATGATACTAAGTCGAAAGCTCTGAAGAAGTGGGAGGAGTCACTG
AAGACTGAGAAGGATAGCTTATCCGAAGAAAAGCTGCAAGTGGACAATGAACGAAAACAG
GCTGAGATGTACAGATCAGATATTGAAAGGCTGAAAGCCACAATTGAAGCTGAAAAGAAG
AAAATTTTAGAAGAACAAAACAATTTGAAACTTACAGAGGAAGAGAGACAAGAGCACAGC
ATGCTGACAGCACAACTGAAGAAGGAGATTGATGAGTATAGAATGCGAAGCAATTCCCTC
TCGGAGGAAACTGAAGATTTGAGGAAGCAGCGGCAGAAATTCGAAGAAGAGTGGGAGCAG
CTTGATGAAAAAAGAGCTCATTTAGAAGAGGAGGCAAAGGTGCTCAAGAATGATAAAACA
AATCTAGGAAAGTGGCGTCACAATGAAGAGAAGAGATTCAAGGATACACAGGATGAAATG
GATGCAAAATACAAGGAGCAGCAGGATAGTCTTGCACTCAAGGAAAAAGCTTTATTGGAT
GATATAAAACACCAGCGTGAGGAGATTGATGAATTTCTGAAGAGAGAACGTGCTGATCTT
CAGCGTAATTTGCAGCTCCATAGACATGAACTGGAGATGGAGATGGCGAATAAACTAGCA
ATTAAGCAGAAGGAACTGGAACAGAAGGAGGATGAGTTAAATAAGAGAAGGGATTTTGTA
GAAAATGAACTAAGGCATGCTATTGATTTGAACGAGTCCAAGATTCAAAAGATAACATTG
GAGAAAGAACAGCTGCTGAGGGAAAAAGAAGTTCTAGAGGAGGAGAAGCAAAAATTGGAA
ACTGACAAGGCAGACATTAGAAGAGACATTGATAGTCTTCATGCACTCAGCAAGAGTCTG
AAGGATCGCCGAGAAGCATACAACAGGGACAGGAATAACCTCATTGATATGTTTGAAAAG
TACAAGGTGTGCAAAAGCTGTGGGGTTTCTGTTTTTGAGGGCTTTGGTGATCTATCTCTC
AAGGATGATGCTGATATTGACCACCCAAGTTTGGCTGTTGAGGGAGATGGTCGTTCCCCG
AACACTGATAATTTGGCTCAAGACACAGGAACACTTGTTAATTCAGCTGGTCGTTTCTCA
CTGTTGAAGAAGTGTTCAAGGCTTTTCAAGTTCTCTCCTAGGACAAAGGCCGAGCAGTCA
TCGGACCAGGAAGCAGAAATTAACATTCCTTTTGGTGCGAGATTAGAGGAAGCATCACCG
AGTGAAGCAGATTATGAGCCAACTCCTGTCTATCAGGCAGCAAATAATTCTTTTGATGCT
GAGGGTCTCCCTTCTGACAGTGGAGCAAGGGGGAATGTAGAATTCGAAAGGCTTGATATA
GCTGATGATATCCAAATCGAGTCTTCTGTTGGAGTTGCAGATAATTGTATAGATGTTCAT
GGAACTCAGCCATTTGCTGGTGCTAATGACATGGCAGTTGACACAACAATTGCCTCTGTG
GACCAAAATGGAAAGGACTCAACGGCTGCCCCTGAAGTTGAATTGCAACCTGAAACATCA
AAGCCTCCGAAACGGAAGGGTAAACCAAGAAGGACAAAGTCGGTTCGTGCAGTGCTTGAA
GATGCTAAAGTAGTACTTGGTGGGAATTTTGATGAAAAGAATGATGATCAGGAAGATTCA
GTTACTGTTGGTGGTACACGGAAGAGGCGCTTTGCTGGACCAGAGATCAGTGAGGAAGAT
GAAGAAGTTAGTGAAGCACAATCTGAAAGTGTTTCAGTTGGCGGGCAGCCTCGTAAGAGG
AGGCAGCCATCTGGCCCGTTGATGCAAACCACAGGTGAAAAACGCTACAATTTGAGACGC
ACTACAGTTGCAAATGCCACAGCAGCAGCCCCTCCACGGGAGAAGAAGAAAGCTGTGAGG
AGAGGAAAAAAGCAGACGGTAGAAACTACCGCTGATGACACGGAAGGAACCTCTAAAGCT
GCTGATAGCAAGAGGACGGGCCCCTCTGAATCAGCTGATGGTGCATCCCAGTTGCAAGAG
TTCTCCCAGGCTGAAACTGTTGATGCCCATGCTACTGCCGGTGAGGAGTATGGTGATATT
GTTGTGGATGGTGAACAAGGTGAAGATGCGATGCCCATGACACCATCAGGAAGTGAGCGT
GGGGGCGTTGAAGATGACGACGAGGATGATGATGATGATGATTCAGAGAGGCGAAACAAA
TCGATTGGGAAAACGCTATGGTCTTTCTTCACGACATAACAAGAGGAAGAATAATAATTG
CATCTGATTAGGTTGTTTCTAGCGTTTCTTGTTTTGAATTGACGATTCTTGGAAATCTAG
GTTGGTGTGTTTGGTGATGATGTATCAGTAGATTTTTCTTGCACTCATTATGTCAAAGCG
TCATGTAATTGAGAATGAGTATATCTTGTAGTAGACAGTCAAGTCAGTCAGACATAGTTT
GATGGATGGCGCTCACAGAATTTAGGTGATGCCCATGTACTCTACTCATATTATGGCAGC
GATGCCTGTAACAGTCGAGAGTTGTTGAGGTTTGTAAAAAAAAAAAAAAAAACCACGTCC
AGATTACTTGCTTTGGTCAC

Homology of Contig U35_16336 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48010.1	1156	0.0	protein\|nuclear matrix constituent protein 1-like, putative, expressed
Brachypodium v1_2	Bradi3g53047.1	1158	0.0
Arabidopsis v10	AT1G67230.1	1132	2e-63	\| Symbols: LINC1 \| little nuclei1 \| chr1:25151561-25156032 REVERSE LENGTH=1132