barSeed - Barley Seed Development Database

Probe CUST_28867_PI390587928

Source Contig U35_31352

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28867_PI390587928	Hv_44K_v2	TAACCAGATCGGTTCCAAGTTCTGGGAGGTCGTTGCCGACGAACATGAGCGTTGACCCCA	74	GeneList: grey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.918	0.914	2.261	0.633	0.963	1.552
Raw	5.931	8.455	22.415	7.920	2.705	8.710

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC31525	555	3e-25	75 - 134	100	60 / 60	plus
Harvest35	U35_31352	555	3e-25	75 - 134	100	60 / 60	plus

Contig Sequence (555 bp)

>U35_31352 555 Hv_44K_v2
GTTTCTGTACTTTATTGAGGTCCACACACCGAAGACATGCGCGAGATCGTTTCCATCCAG
GGTGGCCAGTGCGGTAACCAGATCGGTTCCAAGTTCTGGGAGGTCGTTGCCGACGAACAT
GAGCGTTGACCCCACCGGCACGTACCAGGGTGACTCCGACCTCCAGCTGGAGCGCATCAA
CGTTACTTCAACGAGGCGACTGGCGGGCGCTACGTGCCCCGCGCGGTGCTGATGGACTTG
GAGCCCGGCACGATGGACTCCGTCCGCGCCGGCCCGTACGGCCAGATCTTCCGCCCGGAC
AACTTCGTGTTCGGCCAGAGCGGTGCTGGTAACAACTGGGCTAAGGGCCACTACACCGAG
GGTGCGGAGCTCATCGACTCCGTCCTCGACGTCTGCCGCAAGGAGGCTGAGAGCTGCGAC
TGCCTGCAGGGCTTCCAGATCGGCCACTCCCTGGGTGGTGGCACGGGCTCCGGCATGGGC
ACCCTGCTCATCTCNAAGCTGCGCGAGGAGTACCCCGACCGCATCATGATGACCTTCTCC
GTCATCCCGTCGCCG

Homology of Contig U35_31352 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g34170.3	435	4e-77	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g32430.1	436	5e-78
Arabidopsis v10	AT5G12250.1	449	3e-77	\| Symbols: TUB6 \| beta-6 tubulin \| chr5:3961317-3962971 REVERSE LENGTH=449