barSeed - Barley Seed Development Database

Probe CUST_28846_PI390587928

Source Contig U35_29041

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28846_PI390587928	Hv_44K_v2	AGTTTCCTTGTTATAATGCTGTCTAAGTCTCAACCTGCTACCCCAGTTGCTGCTGCTACT	300	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.517	0.479	1.405	1.897	1.019	1.335
Raw	65.748	87.120	238.476	513.405	99.999	140.072

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC28197	668	3e-25	301 - 360	100	60 / 60	plus
Harvest35	U35_29041	668	3e-25	301 - 360	100	60 / 60	plus

Contig Sequence (668 bp)

>U35_29041 668 Hv_44K_v2
GGCGAGTCCGAAGTCAGGCGAAAACCCTCGAGGCGAAGCGAGAGTCGCAGATAGGGATAA
CCGCGAGAGTCGAGTGAGTGGGTTGGAAGGGAAGCCGAGATGAAGCTCAACGTGAAGACC
CTCAAGGGCACAAGCTTCGAGATCGAGGCGACCCCCGAGTCCTCGGTGGGTGAGGTCAAG
AGAATCATCGAGAGTGCTCAGGGGCAGAATGTGTACCCTGCGGATCAGCTGATGATCATA
TATCAAGGAAAAATTCTCAAGGATGATACCACTCTGGATGCTAACAAGGTTGCAGAGAAC
AGTTTCCTTGTTATAATGCTGTCTAAGTCTCAACCTGCTACCCCAGTTGCTGCTGCTACT
CCACCTGTCCCTGTTGCCTCAGCTGCAAGATCACCACCTTCACAAGCACCTGTTGCTGCA
TCTGAACCGGCGCCTCCCAGTGCACAGCCTTCAGCTGTTTCTGATACTCCAGCTGCTGCA
GTAACTGCATCAGGCGATGCTGATGTATACAGTCAGGCTGCATCAAACCTTGTCTCTGGC
GGCATTCTAGAACAGACAGTCCAACAAATTCTTGACATGGGTGGTGGCACCTGGGAACGT
GATATGGTTGTCCGTGCTTTACGTGCTGCGTATAACAACCCTGAGAGGGCTATTGACTAC
CTGTATTC

Homology of Contig U35_29041 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None