barSeed - Barley Seed Development Database

Probe CUST_28843_PI390587928

Source Contig U35_43336

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28843_PI390587928	Hv_44K_v2	AGGGCAAGACCATCGGCCTATACTTCGCGGCCAACTGGTACCCCAAGTGCGAGGCCTTCA	292	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71950.2	1867	2e-24	1274 - 1333	100	60 / 60	minus	ABC21613
MLOC	MLOC_71950.3	1721	2e-24	1092 - 1151	100	60 / 60	minus	ABC21613
MLOC	MLOC_71950.4	1717	2e-24	1092 - 1151	100	60 / 60	minus	ABC21613
JLOC1	JLOC1_47847.1	1783	8e-25	388 - 447	100	60 / 60	plus
Harvest21	ABC39879	628	3e-25	293 - 352	100	60 / 60	plus
Harvest35	U35_43336	628	3e-25	293 - 352	100	60 / 60	plus

Contig Sequence (628 bp)

>U35_43336 628 Hv_44K_v2
TCGGCGTAGCCGCTAGAATCGACTCGCAGTCACTGCTGCCGTTCTGAGAGCACGAAGCCA
CCGCAGGCTGCTCCACACCACCTTCCCAGTCTCTGTTGCTGCTCCTATCCGGCACGCGGT
GCCGTGGATCAGGCGGCACATCGAAAGTGCCTGGTCACCACCAGGACACCGAACATCGTC
GGAGATCCGGGGATGGAGGAGGCACAGGAGAGCGGTGGAGGCATCCGCTCCGCGCTCCCC
CTCGGCTCGCTCATCTCTCCTTCCGGGAACGAGGTGGAGCTCCCGGAGCTAGAGGGCAAG
ACCATCGGCCTATACTTCGCGGCCAACTGGTACCCCAAGTGCGAGGCCTTCACCCCGGCG
CTGGCCGCCGCGTACCGGCAGCTCAGGGGCCGCGGCGCCGGCTTCGAGGTCGTCTTCGTG
TCGTGCGACGAGGACCGGCCGTCCTTCGAGCGGTTCCACCGCGCCATGCCGTGGCCCGCC
GTGCCCTTCGGCGACATCCCCTGCAAGAAGAGCCTCAGCGACATGTTCCAGGTCGAGGGC
ATCCCGCGCCTGGTGGTGCTCGCCCCGGACGGCGCCGAGGTCGTCTGCTCCGACGCCGTC
GAGCTCGTGCACCGCTACGGCGACCCGG

Homology of Contig U35_43336 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g58194.1	395	5e-77	protein\|protein disulfide isomerase, putative, expressed
Brachypodium v1_2	Bradi2g52317.1	398	1e-88
Arabidopsis v10	None