barSeed - Barley Seed Development Database

Probe CUST_28842_PI390587928

Source Contig U35_29043

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28842_PI390587928	Hv_44K_v2	AGAACATCACTGACTGAACTGGAACAGAGCTACTTTGTGAAAGTTGGCCGAATCACTGAG	482	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55034.1	11285	2e-24	8452 - 8511	100	60 / 60	plus	ABC16764
MLOC	MLOC_55034.2	10833	2e-24	8003 - 8062	100	60 / 60	plus	ABC16764
JLOC1	JLOC1_35468.2	11184	8e-25	8296 - 8355	100	60 / 60	plus
JLOC1	JLOC1_35468.1	11304	8e-25	8416 - 8475	100	60 / 60	plus
Harvest21	ABC28199	610	3e-25	483 - 542	100	60 / 60	plus
Harvest35	U35_29043	610	3e-25	483 - 542	100	60 / 60	plus

Contig Sequence (610 bp)

>U35_29043 610 Hv_44K_v2
GGGAGAAAGCAAGCAAGGTTCTATCTGTTCTTGGGATAGCTGTGAGTCAGTTATACAGTG
GCATTAGAGTCAGAGTGTCCGAACTCTCAACTAAAGCTGTTGGGATAACTAAGTTCAGGA
CAGATGAAGCTGGTCTTCAAGCTGATGCTGGAATGAGTCTGCAATTGTTTGATCAGCAGA
TCGAAAAATGTGCATTACTTTCTGGTTTTGTCAAGGAAGTGCATGAAGTGATGGGGACAA
AATTAGGTGAAATAAACGCTGATTATCTAAAGCATCGGCCTGGACAATGGGCTTATACAT
TTCAGGCCATTTTGCACTCAAGTACCAACATGATTGAGCAAATGACCGAAGTTTTTCTTC
CAGAAATTATTAGAACGTTTGTCTCGTACAATTCGGAGGTAATGGAAGCCTTCGGTTCAA
TTTCTCGGATACGTGGTTCTGTTGACACAGCTCTAGAGAAGTTGGCTGAGGTAGAACTTG
AGAGAACATCACTGACTGAACTGGAACAGAGCTACTTTGTGAAAGTTGGCCGAATCACTG
AGCAGCAAGTAGCTCTTGAAGAAGCTGCCATGAGGGGTAGAGACCATCTATCCTGGGAAG
AAGCAGATGA

Homology of Contig U35_29043 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g52794.1	3787	4e-94	protein\|phosphatidylinositol kinase, putative, expressed
Brachypodium v1_2	Bradi1g09310.1	3630	2e-104
Arabidopsis v10	None