barSeed - Barley Seed Development Database

Probe CUST_28838_PI390587928

Source Contig U35_29048

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28838_PI390587928	Hv_44K_v2	ATTGGCTATTGCAAGCTTCTTTTCAGCTTCAGATATGTATAGATTTCAGAAACCTGGTGG	510	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.410	0.424	1.176	2.047	1.319	0.925
Raw	46.909	78.336	185.523	494.207	114.138	87.000

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249000.1	2110	2e-24	803 - 862	100	60 / 60	plus	ABC23705
JLOC1	JLOC1_16551.1	1358	6e-21	587 - 645	97	58 / 60	minus
Harvest21	ABC28205	670	3e-25	511 - 570	100	60 / 60	plus
Harvest35	U35_29048	670	3e-25	511 - 570	100	60 / 60	plus

Contig Sequence (670 bp)

>U35_29048 670 Hv_44K_v2
GGCCCTCCATCTCCATGGNACGCAGCACAAGAGACGAGGTTACTGGTCCAAGAGGATGGG
GATCAGGATGCAAGTCTTTACACAGGTGATGGGTCCGTTGACATCAAAGGCCGTCCCGCA
ACAAGGCGCGACACAGGCAATTGGCGAGCATGCGTCTTCATCCTAGGGCCTGTCTGTTTT
AACTCTTTCAGCATCGCTTCCAGCACTTCAGCCACCTTCATGTTTAGGAACCGTTTGTCC
AGAAGCAAGCTTACTTCAAAATGGCACATTTTTCCTAGGTCTCTATATGATTGCCCTAGG
GACCGGAGGTATTAAACCATGTGTGTCATCCTTTGGGGCTGATCAATTTGATGACAGTGA
TCCGACAGAGAGAGTAAAGCAGGGTTCCTTCTTCAACTGGTTCTATTTCTGCATAAATAT
CGGTGCATTCATATCAGGCACTGTTATTGTTTGGATACAAGATAACTCGGGTTGGGGAAT
AGGATTTGCCATTCCTACTGTATTTATGGCATTGGCTATTGCAAGCTTCTTTTCAGCTTC
AGATATGTATAGATTTCAGAAACCTGGTGGGAGTCCACTTACAAGAGTGTGCCAGGTCGT
TGTCGCAGCGTTCCGTAAGTGGCATGTTGAACTGCCACATGACACTGCTCTTTTATATGA
AGNTGATAAT

Homology of Contig U35_29048 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g13240.2	541	6e-98	protein\|peptide transporter, putative, expressed
Brachypodium v1_2	Bradi1g68860.2	589	3e-103
Arabidopsis v10	AT2G02040.1	585	7e-71	\| Symbols: ATPTR2-B, NTR1, PTR2-B, PTR2, ATPTR2 \| peptide transporter 2 \| chr2:487542-489707 FORWARD LENGTH=585