barSeed - Barley Seed Development Database

Probe CUST_28828_PI390587928

Source Contig U35_17072

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28828_PI390587928	Hv_44K_v2	GTACTTTGATTTGATATGTGATCACATTACTAAGTTAACGGCAGTGTTGTCTCAGTCTAA	1843	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.115	1.199	1.083	0.952	0.403	0.406
Raw	471.399	779.892	620.197	865.825	128.959	139.647

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62048.2	2891	6e-24	2231 - 2289	100	59 / 59	plus	ABC06726 ABC45841
MLOC	MLOC_62048.1	2167	6e-24	2090 - 2148	100	59 / 59	plus	ABC06726 ABC45841
JLOC1	JLOC1_40588.1	3174	3e-24	2087 - 2145	100	59 / 59	plus
Harvest21	ABC06726	1918	3e-25	1844 - 1903	100	60 / 60	plus	ABC06726
Harvest35	U35_17072	1918	3e-25	1844 - 1903	100	60 / 60	plus

Contig Sequence (1918 bp)

>U35_17072 1918 Hv_44K_v2
CAGAGGAGTGAGGTATAACAGTTATCACGAAGATTGCGACAACCAAAATCATGGTGAAAA
CCAGAACCGGCCCCAAAGGGTTGTCCGCGGGAGAGGACCCAGACGTTATGACACGATTGT
AAAGAACAACCGAGATGTTACCGGGTTCCAACGTAAACAAACAACAAGATCTCATGAACC
GGCCGCTCATTCTGCAGCGGCCAGAGAGCCTGGCCAAATTTCAAATGCACATTCGGAAAC
AGTTCCTGCTAAAAAGAATGTTGTCAATTCAAGCTTAAATTCTGCGTCACCACCATTTTA
TCCCTCTGGCGCGTCAAACCACGTGGGAGCTCAAAGAAGGGACATACAACCAGGAGGTTC
AAATAAGGTTCATCCATCTTCCATGAAGATGGATGACAACATGAAGCTACAATCTGGTCC
AGTAGTTAGAGGGAAAGGAACGACGGACTATGGTGGACGAGATAGGTTTCAGGCTGAGGG
TCCTGTTAGACCATCTCCTGCAAGAACTGCAGGAGGATCATCATACTCATCAGGGTTTTC
ATCATCATCAATCAATTCTGGTCAATCCCCTAATAACAGAGCTCAAGGGGGAAATGCAAG
CATTGGGGTTCCGTCACATAATCGCCCCACGCCATCATTTCAACAAACTTCTAGGGTTTC
TACGCAACAGCAAAACCACACCTCAATTATGCACCAGAAGTCAGGCCAAGCACCTACTCA
AGCTGCAATGAGAATCCCAGCTCAGCAGTTGAGCCATCGGACATGCAATGCTTCACCAAG
TGCTCAGCACCTACCTGCTAGATCAACTGAAAGTGGCGAGAATGGCTCATATCCTAGTTC
AAATCAATCCAAGACATCTGACGTGGAAAAACCCAACAAAGAAACTGGACGAGGCTCCTT
CATGTATGGTGGAGCCCAGGTTATTGGTGCTGCTGGTCTTGCCCAGGGCGAGCAAAATTT
TCCTGGCACTCCAGCTCTCCTGCCAGTGATGCAATTTGGCGGCCAGCATCCAGGTGGGCT
TGGAGTTCCTACTGTTGGTATGGCCCTCCCTGGCTATGTGGCTCAGCAGCAGCTGGGAAT
GGGAAATAACGAAATGGCGTGGTTGCCACTATTGGCTGGTGCAGCTGGGGCTTTTGGAGG
ATCATATCCACCTTACATTACCCTTGATCCAAGCTTTTACTCTAGGTCTTCAGGACAGAC
GTCATCGTCAGTAACATCCAGGGAAGGTAACGTTAACCATGGGGCTAAATCTCCTCCTCA
AAAGGATATTGTGACTGAAGAGCATGATCAGCGCCAGAACAAGCATAGGAGATACTCAGA
GATGAACTTCAGTCAGTGAAGCACCTGAGGTGAATTCCATCTGAATAAGCTGCTTACGGC
CCTGTTTTAGGCCCTCTGTGATCTCTGGTTATGATCTGAGCACTTTGGGTGGCTTGCTGT
CCTAAATTATATTAGGTCTTATAGATGCCTCTGCTCGTGCTGTAGTTATCTGATGGGGGT
CGCTTCGCAGCAGAGCAGGGGTTGCATTTGTTGCTTGAGTTGTGGTGTTGCTTGGTCGAA
ATGTCTAATTCTTTGGTGGCATCTGAAGATGTGAGCCGTTGTTGAAGAGAGGTTTGAATA
ATGAGTTAATGACGCGTGTTGATTGATAAAGAAAGGCAAGAAGGGCTTTTAGTAGATTTT
GTTAGTGACTCAAGTTTATGTCGGTCTGAGTCTGATGTACCTGTCTATCCCCCAAAAGTG
GTATTGGTAAGAACTAGTGGCTTTGTTGCTGCAGTTTGTATCTTTTGGAGTGTAGGAATG
TGGGTGAGATTTGTCAATTTTGCGCTTGATGAGTGTGCCCGTGGTACTTTGATTTGATAT
GTGATCACATTACTAAGTTAACGGCAGTGTTGTCTCAGTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17072 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g41190.2	691	2e-159	protein\|glycine-rich protein, putative, expressed
Brachypodium v1_2	Bradi2g42540.1	696	0.0
Arabidopsis v10	None