barSeed - Barley Seed Development Database

Probe CUST_28820_PI390587928

Source Contig U35_17076

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28820_PI390587928	Hv_44K_v2	GAACTACTTCTATCCACAATTGGACTCGTGTATGGTATTATGGTGTACGGTGCTTTTGGC	1474	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.350	1.387	1.161	0.990	0.491	0.454
Raw	6023.430	9683.623	7084.617	9219.500	1661.797	1660.450

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367382	1514	3e-22	1419 - 1477	98	59 / 60	plus	ABC07048 ABC52598
MLOC	AK358543	1580	3e-22	1438 - 1496	98	59 / 60	plus	ABC07048 ABC52598
MLOC	MLOC_74269.1	2635	3e-22	234 - 292	98	59 / 60	minus	ABC07048 ABC52598
JLOC1	JLOC1_49489.1	2628	1e-22	198 - 256	98	59 / 60	minus
Harvest21	ABC07048	1526	5e-23	1413 - 1471	98	59 / 60	plus	ABC07048
Harvest35	U35_17076	1588	3e-25	1475 - 1534	100	60 / 60	plus

Contig Sequence (1588 bp)

>U35_17076 1588 Hv_44K_v2
ACAGGATCAGGCCCGATTCACCCAGCTCGACAGATCTCACGCTCGTTTCCTCCTTCTCTG
GCGATTAGGGTACCCCACGCCGCCGCCAGGTGCTTGTCGTCCCGGCCGGTGCGCCGCCGG
CGCCGCCGGCGCCTCCGCCCCCGCCCCCATCCGCTGCCGTGATCCCCGTCCGCGCGCCGC
CGGCCGCTGGCCTCTGACCTCCTCGCGCCGTGGACCTCGCGCCCCTCCTCGCGCCGTGGA
TCTCGCGCCGCCGGCCGCTCTCCTCCGACCTCCTCGCGCCGCCGCCGGCTCTTGTTCTCT
CAGGCAGGTTCCTATTACTCAAAACAGATAGGAGCTTGAGGTGGTTGACGTAGAAGAGTT
GGTTAACACTTTAAAGCTGACATTACGTGATTGGAACTATGCCTCCTCATAAGATAGAGA
CTGGTCACCAAGATGTGGTGCATGACATCGCAATGGATTACTATGGGAAGCGCCTCGCAA
CTGCATCCTCTGATAACACAATAAAGATCATTGGCATAAGTGGCACCTCGCAGCAGCAAC
TTGCTACTTTGAGCGGACACCAGGGCCCAGTTTGGCAAGTCGCTTGGGCTCATCCTAAGT
ATGGTTCCATGCTTGCATCCTGCAGCTATGATGGGCGGGTTATAATATGGAAAGAAGGGG
GTAAACCTGATGAGTGGGCACAGGCTCACACGTTCGTTGAGCACAAGTCCTCTGTAAATT
CCATTGCTTGGGCGCCTCATGAACTTGGCCTCTGCTTGGCTTGTGGTTCATCTGATGGGA
ACATTTCAGTCTTCACAGTTCGTTCTGATGGAGGATGGGAGACGACGCGCATCGATCAGG
CTCATCCAGTGGGTGTGACCTCTGTCTCATGGGCTCCGGCGATGGCCCCGGGTGCCCTAA
TCAGCCCAGGGCCTTCGGGGCAGTTTGAGTATGTTCAGAAACTTGCTTCTGGTGGTTGTG
ACAACACAGTCAAGGTGTGGAAGCTCACCAACGGGAGTTGGAGGATGGACTGTTTCCCAG
CCCTTCAGATGCACAGGGACTGGGTGAGAGATGTCGCCTGGGCTCCAAACCTAGGCCTCC
CAAAGTCCACAATCGCCAGCGCCTCCCAGGACGGAACTGTTGTCATCTGGACCGCGCCGA
AAGAAGGTGAGCAATGGGAAGGAAGAGTTCTGAACGATTTCAGAACCCCTGTTTGGAGGG
TGTCGTGGTCGCTGACAGGAAACATACTGGCGGTCTCTGATGGCAACAACAACGTGACCC
TGTGGAAAGAAGCTGTGGATGGCGAATGGCAGCAAGTGACTACCGTCGAGCCATAGATGT
TTCGTGTTCTACCGCTAGCTGCATTTGTCTTCATATTATCTGTATGGCTTTGATTACAAG
TGGAGGGCCCTGTGATTGTTAGGCTGCTGCTTTGGCAGGACAGAACAGGCAGTGCATGTG
ACAAGCTTTTTTACTTGATTAAGCAGAAAATTTAGAACTACTTCTATCCACAATTGGACT
CGTGTATGGTATTATGGTGTACGGTGCTTTTGGCACAACCATCCTTTTTGCAAAGTTGTT
CCGTGGATTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17076 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g04320.1	306	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi2g07030.1	306
Arabidopsis v10	AT2G30050.1	302	transducin family protein / WD-40 repeat family protein \| chr2:12825540-12826448 FORWARD LENGTH=302