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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_28815_PI390587928Hv_44K_v2CACTCATGTCCCTAGTAGTTAAAACATTCTGGTAAATACTAGTACTACTCTATGTCTATG2520GeneList: yellowgreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.0032.3621.6730.9620.3210.349
Raw 796.1653017.6661816.7631694.329190.848231.354



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK248297.126832e-242593 - 265210060 / 60plus ABC07184
MLOCMLOC_53738.322632e-24704 - 76310060 / 60minus ABC07184 ABC11406
MLOCMLOC_53738.137202e-242861 - 292010060 / 60plus ABC07184 ABC11406
MLOCMLOC_53738.236862e-242681 - 274010060 / 60plus ABC07184 ABC11406
JLOC1JLOC1_34536.138128e-252668 - 272710060 / 60plus
Harvest21ABC0718426113e-252521 - 258010060 / 60plusABC07184
Harvest35U35_1707926003e-252521 - 258010060 / 60plus



Contig Sequence (2600 bp)

>U35_17079 2600 Hv_44K_v2
GTACGCGCATTGCCTCCTTCCTTCCGAGCAGTCGCTCGCTCACTTCTTCTCTCTTCTCTC
CTCTTGCCGGGGAGTTCTTGGAGGGAGATTGTAGCTTGCCTAGCAGTGTTCTTGGAGCTG
CTGCCGGTGGAGGTCTGCAATGGGGAGGAGCGGCCATGCCTGCTCCGTTCTTGGGTCGCT
GCTGCTGCTGCTGCTGCTGCCGCTGCTGGGCCCCGCCGCGGCGCAGAAGGGCTCGACCTG
GAAGACGCTGAGTGGCAATGCTCCAGCAGTCATAGCTAAGGGTGGTTTCTCCGGCCTATT
TCCTGACTCCAGTGACGCTGCTTATTCGTTTGCTGCTGGCCCTCAGGATTCAGCCCTGTG
GTGCGATGTTCGGTTAACCAAGGATGCCGTTGGCATCTGCCTTCCAGACATAAAAATGGA
TAACTGCACAACCATATCCGATCTTTTTCCAAAGGGAAAGAAGACCTACCGTGTAAACGG
TGTGTCCACGACCGGGTGGTTCTCTGTGGACTATACAGGCATTGAACTGTCCAATGTAAC
TTTGCTGCGAGCAATCTTGTCTCGCACAAATAGGTTTGACGGAAGCTTCCAAATAGTTCC
AGTTGAAGTTGCACTGTCACAATATAAGGCCCCTACTTGGTTGAATGTTCAGCATGACAG
TTTTTACAGCCAGTTTAATCTGAGCATGAGAAGCTATATCCTGTCTATGTCAAAGCAATA
CACTGTTGACTACATCTCATCCCCTGAAGTGAGCTTCCTCAAAAGTCTACTTGGAAGAGT
TGGCAGGAAGACAAAGCTTGTGTTCCGTTTTCTTGATGAAGGCCTTGTCGAGCCATCAAC
AAACCAGACATATGGCTCAATGCTGAAAAATCTATCATCCATCAAGACTTTTGCTTCTGG
AATACTTGTCCCCAAACACTATATCTGGCCTGTTACGGCAGATAATTATCTGCAACCCTC
CACTTCAGTCGTGGATGATGCTCATAAGGCCGACTTAGAAATTTATGCTGCTGATTTTGC
CAACGACTTTGCGCTCAGCTACAACTACAGCTATGATCCGTTAGCAGAATACCTTCGCTT
CATCGATAATGGCGCCTTCTGTGTTGATGGTCTCTTGACTGATTTCCCTATCACTCCATT
AGAGGCCATCGGTTGCTTTACTAACCTGAACAATACCAAGGCAGATCATGGGGCACCTCT
AGTTATCTCCCACAATGGTGCTAGTGGCGACCATCCTGACTGCACTGACCTAGCTTATCA
GAAGGCAGTTGCTGATGGTGCAGATGTCATTGACTGTGCTGTTCAAGTGACAAAAGATGG
CATACCAATATGCATGAGTTCCATTGACCTAATGGATGTCACTACTGTCGCATCCTCACA
ATTTTCTTCTCAAGCGGGTGTCATAAATGACATTAAGGCTGTTGCTGGAGTCTATACCTT
CAACCTCACTTGGGAGGATATTGCAAACAACCTGAAGCCTATGATATCAAACCCATTTGG
CAAGTCTACCCTATCAAGAAATCCCAGAAGCAGGAACGCAGGAAAATTCATGAGATTATC
AGACTTCTTGGCTTTTGCAAAAGGAGAAGATTTGTCAGGAATCATGATTACCGTGGAGCA
TGCTTCATTCATGGCAGAGAAACTTGGGTTTGGTGTGGTAGATGCAGTGATCAAAGCTGT
CGATGACTCCGGTTACAGCAAACAGACTGCCCAGAAAGTGATGATCCAGTCAACAAACAG
CTCAACTCTAGTGAAGTTCAAGCAGCTGGCCAAGTATAACCTTGTGTACAAGATCGACGA
AGAAGTGAAAGACGCCGCGCCTTCGTCCCTTGCAGATATCAAGAAGTTTGCGGATGCCGT
TTCTGTCAGCATCAAGTCTGTTTACCCAGAGACGAGCAATTTCTTGACAAACCAGACGAA
TCCTCTTGTCAAGTCCCTGCAGTCTGCTGGCCTTCCAGTCTATGTCTATCTGCTGATGAA
CGAGTTCCTTTCTCAGCCGTATGACTTCTTCTCAGATGCCACGGCACAGATTAATGCCCT
TGTGCACAAAGGTGTAGAGGGAGGGGGAGTGGATGGACTCATCACCGATTTCCCCGGGAC
GGCCCATAGATACAAACTGAACTCGTGCAGGAAGATGGGGGACAAGACGCCCTACTACAT
GCTGCCTCCCCAGCGCGGCGGCCTCCTTGGGGTCATACCGGATAAAGCAGCATTGCCACC
AGCAATGGCCCCAATGCCGGTGTTGACGGACTCGGACGTGGCGGAGCCGCCCCTTCCTCC
TGTGAGCAACACCACAGGTCCGGCGCCCTCCCACGCCGCCTCCAGAATACGCACGGACGC
CGGCGTGATGCTGCTGGTGCTATGCGCTTCTCTGCTTATCTGAGACTGAGGACCATTCTT
TTCTGCCACCTGTTCTATGTAGCGAGCGATTCATTTTTCCTTTTGGTTTGGCTGTACAAG
TATTTGGGGGTGGTGGACGTTGAGGTTGAATGATGATTCATGCCTGGATCTGGATGGTGC
CACTCATGTCCCTAGTAGTTAAAACATTCTGGTAAATACTAGTACTACTCTATGTCTATG
ATTGCTAAAAGAAGTGATGC



Homology of Contig U35_17079 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g37590.17500.0protein|glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
Brachypodium v1_2Bradi3g47340.17500.0
Arabidopsis v10AT5G55480.17660.0| Symbols: SVL1 | SHV3-like 1 | chr5:22474277-22477819 FORWARD LENGTH=766