barSeed - Barley Seed Development Database

Probe CUST_28814_PI390587928

Source Contig U35_43342

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28814_PI390587928	Hv_44K_v2	ATATGTATTCAGGATTGGTGCGCGTGGCGTCGTGTCTGTAATAATGAGCTGACCATTCAA	49	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.134	1.243	1.214	1.348	0.615	0.541
Raw	184.885	313.617	274.894	494.361	76.097	71.840

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC05639	1325	3e-25	1217 - 1276	100	60 / 60	plus	ABC05639
Harvest35	U35_43342	527	3e-25	50 - 109	100	60 / 60	minus

Contig Sequence (527 bp)

>U35_43342 527 Hv_44K_v2
TTTTTTTTCTTTTTTTTTTTTTTTTCCTTTTTTTAATTTATTCTCTTGGTTGAATGGTCA
GCTCATTATTACAGACACGACGCCACGCGCACCAATCCTGAATACATATTTGTAGAGGTA
ATCTCTTTTCAAAATGTTAAGCCCTTTGCACTTCTTCATCATCAGACGTGCAGTTCATCC
CGAGAACAGCCAAAATTAAAGTAGCGAGTGTACATACATTATGCATGTGGTAGCAACATA
AATAAACCCTGGGAACAACAGGACGGCAACGGCAAGCCATTTCGCACTCCAAGCGCAAGT
AGCAACAAAGATGTAGCAGGAAACCGTCCATCTGTTTCCTCCTATCACAGCATCAGGCGG
GGGCGCATCCAGTTTTTGATCTTGAAAGAACACTACGACCTTGACAGAACACCTTTGGAG
CTGGGAACAGTGCCACGTCGGCGCAAGTCATATTCTGTTGCTTGTCGAAGGGCCCTACCA
AATGCTTTGAAACATGCCTCGATAATATGGTGTGAGTTGTTCCCCGC

Homology of Contig U35_43342 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None