barSeed - Barley Seed Development Database

Probe CUST_28810_PI390587928

Source Contig U35_29052

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28810_PI390587928	Hv_44K_v2	AACGTTCTGCACAAGTTTATTCTCATCATCTTCGACAAACTCGGCGCCATGTCGGCAAAT	495	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54829.3	1936	2e-24	1267 - 1326	100	60 / 60	minus	ABC16305 ABC47215
MLOC	MLOC_54829.1	4683	2e-24	4024 - 4083	100	60 / 60	minus	ABC16305
MLOC	MLOC_54829.4	1218	2e-24	611 - 670	100	60 / 60	minus	None
MLOC	MLOC_54829.2	5198	2e-24	4539 - 4598	100	60 / 60	minus	ABC16305
JLOC1	JLOC1_35314.1	1879	8e-25	559 - 618	100	60 / 60	plus
Harvest21	ABC28209	606	3e-25	496 - 555	100	60 / 60	plus
Harvest35	U35_29052	606	3e-25	496 - 555	100	60 / 60	plus

Contig Sequence (606 bp)

>U35_29052 606 Hv_44K_v2
GTCCCCCGGGCTGCAGCGCTGTTGGATAAGAGAAGGGAGGAGAGTGGAGGTAGCAGATTA
GCATCCAGATTAGCCGTACTGCCCATCTCGCAGATTCTGAATCTCCTCGCCCTATTGCCC
ATCTTCTTCTTTGGTTTTCCAGTGTATGACCGGGCCACTAATCAACTGAAGCAGCATGAG
CTCCCATGGTGTTGTTGCCGTGAAGCCAATCGCTGCGCCGGAGAAAACCGCGCATTCTTA
TGCCTGTGGATCCACACAGTCTTCAGTTCATAAGCTGCTCGATGCTAAATTGGACCACCT
TGGGCTGTTGGATGATAACCTGTCATCCACCAGTCAGTCATCAGACATCAAGACCGAGCT
GATCCAGTCGTCGAGCCTGGGAAGAAGCAGCCTACCATTTAACCGTCAGAGAAGAAGCCC
TGAGCCTGATCCTGAAAGTCCATTGTCCCATGTCTCACATCCCAATTTTTCAGAGCCAAT
GGCCTCAAACTCTTCAACGTTCTGCACAAGTTTATTCTCATCATCTTCGACAAACTCGGC
GCCATGTCGGCAAATGGGTGCTCTACCTTTCCTGCCTCACCCTCCTAAGTATGAGCAGCA
GGTTCT

Homology of Contig U35_29052 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None