barSeed - Barley Seed Development Database

Probe CUST_287_PI415269222

Source Contig TA53277_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_287_PI415269222	Hv_44K_v2	CGACTTCGGCGCCGACGGGGACGGCATTGCCAACGACACCCAGGCATTGGTCGACGCGTG	213	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54501.1	2818	7e-23	624 - 683	98	59 / 60	plus	ABC17711 ABC21718 ABC25907
JLOC1	JLOC1_35083.1	2392	4e-23	212 - 271	98	59 / 60	plus
Harvest21	ABC25345	426	1e-23	200 - 259	98	59 / 60	plus
Harvest35	U35_25354	426	1e-23	200 - 259	98	59 / 60	plus

Contig Sequence (393 bp)

>TA53277_4513 393 Hv_44K_v2
CGGACGAGGCACGCTTCCGTGACCCAGCAGTGGCAGCGTGGCACCGACCGACGCCGAGCT
AGCTAGCCCGAGCTCGACGGCGCGCGCGCGCAGCATGCCGCTTCGTGCCAGCATGGCTCC
GCGCCTGCTCGCGGCTCTCGCCGGCGCCGACGCCGCCGACGCGCTCCTGCTGCTGCCGGG
CGCCGCCGAGGCACGCGTGCTCCTCTCGCTCGACGACTTCGGCGCCGACGGGGACGGCAT
TGCCAACGACACCCAGGCATTGGTCGACGCGTGGAAGGCGGCGTGCGCCGCCGGCGACAA
CACCTACCTCAACGTGCCAGCCGGCAAGTCCTACCAGATCTGGCCCGTCACGCTCGCCGG
CCCCTGCCGCGGCGAGATCAAGCTCATGATTTC

Homology of Contig TA53277_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None