barSeed - Barley Seed Development Database

Probe CUST_28795_PI390587928

Source Contig U35_31375

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28795_PI390587928	Hv_44K_v2	ACGCCCGTTCATAAAAATTTACAGGCTAAAGCATCGTTCTTTACTCATGTGGGTATTATT	566	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.771	1.616	1.012	0.783	0.312	0.253
Raw	174.723	248.243	135.722	179.815	23.223	20.397

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13319.1	1449	7e-23	1328 - 1387	98	59 / 60	plus	ABC09735 ABC15079 ABC31551
JLOC1	JLOC1_9005.1	1528	4e-23	1299 - 1358	98	59 / 60	plus
Harvest21	ABC31551	639	3e-25	567 - 626	100	60 / 60	plus	ABC31551
Harvest35	U35_31375	639	3e-25	567 - 626	100	60 / 60	plus

Contig Sequence (639 bp)

>U35_31375 639 Hv_44K_v2
TGAGAGGAAGCTCTGCATCTTTGAGGACCTAGAAGTCCCCAGCCACAAGACGAAAAACAT
CGTGCAGCATATCAAGCAGATGGACGATACGAAGAAGGTTTTGTTGGTGGATGGAGGCGA
CATCGATAAGAAGTTAAAGCTGGCTACTCAAAATCTTCACTACGTTAATGTCATTCCGTC
GATTGGCCTCAATGTCTACAGCATCCTGCAGCATGACACCCTCATAATGACTCGGGACGC
AATCAACAGAATTGTTGAGCGGATGCACACCCCCATCAGCCGCTAGCAAGCAGGGCCTGA
AAGAACCTAGCCATACATACTGCACCTTTTATCCGATTTTGGTACAGCCGTTCATGTGTT
GGCCAAAGTGCAGCCCAACCCTCTAATTATCTGTTGTATGGAAGTCGTAGAACAAACTGT
CAGTATGTGGAGCGCTTCCGGGCTTCAAAGTTCGAACCACAGTGTTTTGTTCAAACTCCA
TGTCCATCAAGCTTCCGGGCTTCAAAGTTCAAACCCCAGTGTTTTGTTCAAACTCCCATG
TCCATCAGCAGCTGTCTGCTTTTCCTACGCCCGTTCATAAAAATTTACAGGCTAAAGCAT
CGTTCTTTACTCATGTGGGTATTATTCAAAAAAAAAAAA

Homology of Contig U35_31375 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g30490.1	289	1e-51	protein\|ribosomal protein L4, putative, expressed
Brachypodium v1_2	Bradi4g15150.1	290	3e-53
Arabidopsis v10	None