barSeed - Barley Seed Development Database

Probe CUST_28786_PI390587928

Source Contig U35_15313

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28786_PI390587928	Hv_44K_v2	GCTAGATGGACCGATCTAGAGTTGTAATATATTGTTATGTAATGTAATGTCTGGTGAGTA	1437	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51295.2	1578	3e-21	1525 - 1578	100	54 / 54	plus	ABC04194 ABC04195
JLOC1	JLOC1_32757.1	1655	8e-25	1419 - 1478	100	60 / 60	plus
Harvest21	ABC04195	1525	3e-25	1409 - 1468	100	60 / 60	plus	ABC04195
Harvest35	U35_15313	1599	3e-25	1438 - 1497	100	60 / 60	plus

Contig Sequence (1599 bp)

>U35_15313 1599 Hv_44K_v2
ACATCGGAAAGCACAAGAACACAAGAGCCACGATCACGCCCCGGAAATCTTGACGTACTG
GAGCGAGCTGGCCTGGTCTCGTTTCAAATTGAAGGCTCTCCCACTGCTAGCAGTAGCTAG
AGCTAGAGCAGTGCAGGGCACACCCCGTGCGAGGCTAAACATGGGCAGCCAGGCGGACAC
GACGACGACGTGCCCGCCGTCGGCGCAGGGGCGACTCATCACGGTGCTGAGCATCGACGG
GGGCGGCATCCGCGGTCTCATCCCCTCCACCATCCTCGCATGTCTCGAGTCCAAGCTCCA
GGAGCTAGACGGGCCGGACGCGCGCATCGCGGACTACTTCGACGTGATCGCCGGGACGAG
CACGGGCGCGCTGGTCACGTCGATGCTGGCGGCGCCGGGCGAGAACAAGCGGCCACTCTT
CGAGGCCAAGGACATCAACAACTTCTACCTTGAGAACGGGCCCAAGATCTTCCCGCAGAG
GAGGTTGGGGTTCCTGACCCCGATAGCGAACCTGTTCGGCGCGGTAAAGGGTCCCAAGTA
CGACGGTAAGTTCCTGCACGACAAGATCAAGAGCCTCACCAACGACGTGACGGTCGCCGA
CACCGTCACCAACATCATCGTCCCGACGTTCGACATCAAGTACCTGCAGCCGGTCATCTT
CAACACGTACGAGGCCAAGGTGGACCCGCTCAAGAACGCGCACCTCTCGGACATCTGCAT
CAGCACGTCGGCGGCGCCGACCTACTTCCCGGCGCACTACTTCGCGACCCACGACCCCAT
GGGCAAGCTGCCGGACCGTGAGTATCACCTGGTCGACGGTGGCGTGGCCGCCAACAACCC
CACTATGGCCGCCATGTCCATGATCACCAAGGAAGTGTTGCGCCGGAACCCGGACTTCTC
GCACGGCAAGCCCGCCGAGTACCACAGGTACCTCATCATCTCCCTCGGCACAGGGACGGC
CAAGCAGGCGGAGAAGTACACCGCGCCGGACTGCGCCAAGTGGGGCGTCCTCCGCTGGCT
CTATGATGGTGGCTTCACCCCACTTATCGACATTTTCTCCCATGCAAGCGCCGACATGGT
CGACATCCACGCTGCTATATTATTCCAAGCACTTCACATTGAGAAGAACTACCTACGCAT
CCAGGACGACTCACTCACGGGCCACACATCCTCTGTGGATATCTCCACCAAGGCGAACAT
GGAGGCGCTCATCGGAATTGGCAACATGTTGCTCAAGAAGAAAGTGGCTCGGGTGAACAT
CGACACAGGGATTTACGAGCCCGTTGATGATGAGGGCACCAACGAAGAGGCGCTCGCTCA
CTTCGCCCAGAAGCTCTCCGACGAGCGCAAGCTGCGGTTGAGCCAACCCACCCTCAACTC
TCAATAGACAAGAGAACGATTCGAAAGAGAACAAAGACAAAGAAAACTAGCTGCTATGCT
AGATGGACCGATCTAGAGTTGTAATATATTGTTATGTAATGTAATGTCTGGTGAGTAATT
ATTTTTTATCCAACAATATCGTTGTTTAAACTTTGAAAAATAATATTTTACTACCTAAAA
CGAAGGATGCAAGCTGGATCCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_15313 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g39990.1	418	0.0	protein\|patatin, putative, expressed
Brachypodium v1_2	Bradi4g13670.1	414	0.0
Arabidopsis v10	AT4G37050.1	428	9e-140	\| Symbols: PLP4, PLA V, AtPLAIVC \| PATATIN-like protein 4 \| chr4:17457261-17459642 REVERSE LENGTH=428