barSeed - Barley Seed Development Database

Probe CUST_28781_PI390587928

Source Contig U35_15318

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28781_PI390587928	Hv_44K_v2	CCCCACCTTTTTTGGTTAAAAATGTTTCATGCATTGTCCAATTGTTTATCAGGTTTGAGA	1311	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.076	0.852	2.625	3.096	1.199	0.869
Raw	8.125	9.303	30.049	54.935	6.437	4.650

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC51232	369	3e-25	282 - 341	100	60 / 60	plus
Harvest35	U35_15318	1407	3e-25	1312 - 1371	100	60 / 60	plus

Contig Sequence (1407 bp)

>U35_15318 1407 Hv_44K_v2
TCGAGCACTGTTGGCCTCTGGATCCCCATCCACATCCCCACCGGCTTGCTCCCTCTCTCT
CTCTTGGCCGATCAAGCGCGTTTCTTTGCTGCTGCTTCTTCGGCGGTCTTGTTGGCGATG
GGGGCCGGGATGGTGGAGGTGGAGCTGGGGCCAGGGATGGGGGCGGCGGAGTCCGTGCCG
CCGGCCAAGAGGAGGCGGGTGGTGGCCCTAAAGACCGCGGCTTCGGCGGCGGGAAGGAGG
CCGCGGCGCGCCAGGAGGCCGTCCGCCATCCAGCGGCTCTTCCAGGCCTGCCGCGCCGTC
TTCCGTGGCCCCGGCACCGTGCCCGCCCCCGCCGAGGTCGCCCTGCTCCGCGCCATGCTC
GACAGAATGAGACCGGAGGACGTCGGCCTAAGCTCGGAAATGGCCTTCTTCAGGAACAGG
GACGCCGCAGCCGAAGGGACCCCGACGATCACGCACACCACCATATACAAGTCTGAGAAA
TTCTCCATGGTTCTCTTCTTCTTGCCGACGAATGCGGTCATCCCCCTGCACAACCACCCC
GGTATGACGGTGTTCAACAAGCTGCTCATCGGGTCGATGCATGCAACGTCATACGACTGG
GCTGATCCCGACGATGATCCGGCTAATGAGAGCGGCGCCTCGTCGGCTGACGCTCAATTG
AGGCTGGCACAACTGGTCGTGGACGATGTTTTCACGGCGCCGTGCGACACGTCGGTCCTG
TTCCCGACGGCGGGAGGCAACATGCACCGGTTCAGGGCCGTCGCGCCATCCGCGTTCCTC
GACATCCTCGGCCCCCCTTACTCCATCGAAGAGGACCGAGACTGCACGTACTACACGGAC
ATTCCATACTCCCAGCATCGCATGACCGGCGGTGAGCTCGGCGGGGACGAGCAAGAAGGC
CGGCGTCTCGCGTGGCTGAAAGAGGTGGAGATGCCGAGGGATCTGAAGATGTGCAGCGTC
CGGTACGGCGGCCCACCGATCTCCGGCAGGTGATCGATGATCCTTTCCTTCCAGCCCTTT
TGCGACCGATGATGAGCTGTCAAGCGTCAACCCAACTCAAACCAGATGGTTTCAGAATCG
TTGTTTACCTCGTGAATACAGCAGCAAGCTAGTTAGTTGAGCCATAAGAATAGGTCTCAG
TTTGTGCATGATGTCTTAATCAGTTATGGCAGTTTACCATGTAAGAGTGCTTGCTTGCTT
GCTTTTGCAGCAGCTGTGTACGTGGACCTTGACCAGGAGATCCCTTTGTTGATCTTTTTT
CTCAATACATAGAAGATCATCCATAGATTTCAAAAAAAAAAAAAAAAAATTCCCCACCTT
TTTTGGTTAAAAATGTTTCATGCATTGTCCAATTGTTTATCAGGTTTGAGATTCTTAAAT
TCCTTCCCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_15318 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g42860.1	299	5e-105	protein\|2-aminoethanethiol dioxygenase, putative, expressed
Brachypodium v1_2	Bradi4g01230.1	285	2e-130
Arabidopsis v10	AT5G39890.1	276	4e-65	Protein of unknown function (DUF1637) \| chr5:15974543-15976013 FORWARD LENGTH=276