barSeed - Barley Seed Development Database

Probe CUST_28777_PI390587928

Source Contig U35_15322

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28777_PI390587928	Hv_44K_v2	TGTATCGTATGAGGTGGGGCCTGTCCTCTAATGCCACCTCTAACGCGAAACTCAGGGAGC	220	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.814	0.765	1.408	1.708	0.815	0.949
Raw	128.298	175.344	304.796	583.746	100.376	126.177

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13912.5	1582	3e-22	614 - 672	98	58 / 59	plus	ABC03163 ABC18993
MLOC	MLOC_13912.2	1824	3e-22	967 - 1025	98	58 / 59	minus	ABC03163 ABC18993
MLOC	MLOC_13912.3	1631	3e-22	961 - 1019	98	58 / 59	minus	ABC03163 ABC18993
MLOC	MLOC_13912.4	1659	3e-22	959 - 1017	98	58 / 59	minus	ABC03163 ABC18993
MLOC	MLOC_13912.1	1707	9e-22	978 - 1035	98	57 / 58	minus	ABC03163 ABC18993
JLOC1	JLOC1_9462.1	1681	1e-22	644 - 702	98	58 / 59	plus
Harvest21	ABC03159	286	3e-25	221 - 280	100	60 / 60	plus
Harvest21	ABC03164	632	5e-23	569 - 627	98	58 / 59	plus
Harvest21	ABC03163	1376	5e-23	360 - 418	98	58 / 59	plus	ABC03163
Harvest35	U35_15322	286	3e-25	221 - 280	100	60 / 60	plus
Harvest35	U35_15326	1585	5e-23	569 - 627	98	58 / 59	plus

Contig Sequence (286 bp)

>U35_15322 286 Hv_44K_v2
GCGGCCCGTGCGTGCCTCCCCTCCCCTGGTTGGTTTTCCTCTCCGGTGATGGCGACTGAA
GGCGGCCTCCGGATGCTGATGCTGGCGGACGCCTCGCCGTGGAGCGTCGCCGGCGCCGCG
GCGGCCGTGGCGCTGCTGTGGTTCGCCGCCTGGGTCCTGGAGTGGGCGTGGTGCCCNTTN
ATGAACGCCGCCGGATCTGACGAGACCCTTTGCCGCCGCTTGTATCGTATGAGGTGGGGC
CTGTCCTCTAATGCCACCTCTAACGCGAAACTCAGGGAGCGCGCTT

Homology of Contig U35_15322 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None