barSeed - Barley Seed Development Database

Probe CUST_28773_PI390587928

Source Contig U35_15326

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28773_PI390587928	Hv_44K_v2	CACTGTAACCTATTCACTGAAGTAGTTGAGGCATGTATTAAGTTACTGTTTCTTTTAGCA	1505	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13912.1	1707	2e-24	40 - 99	100	60 / 60	minus	ABC03163 ABC18993
MLOC	MLOC_13912.2	1824	2e-24	29 - 88	100	60 / 60	minus	ABC03163 ABC18993
MLOC	MLOC_13912.3	1631	2e-24	23 - 82	100	60 / 60	minus	ABC03163 ABC18993
MLOC	MLOC_13912.4	1659	2e-24	21 - 80	100	60 / 60	minus	ABC03163 ABC18993
JLOC1	JLOC1_9462.1	1681	8e-25	1581 - 1640	100	60 / 60	plus
Harvest21	ABC18993	1007	3e-25	928 - 987	100	60 / 60	plus	ABC18993
Harvest21	ABC03163	1376	3e-25	1297 - 1356	100	60 / 60	plus	ABC03163
Harvest35	U35_15326	1585	3e-25	1506 - 1565	100	60 / 60	plus

Contig Sequence (1585 bp)

>U35_15326 1585 Hv_44K_v2
GCGAGGTGGACGGCGAAGAGGAGGACGAGCATGGCCGACGGGAGGGATCTGGGCGACGTG
GCGGCCGCGGAACCCGATCCTGATGAAGGGCAGCCTGATCTGGAAGAGGAAGGTGAGCTT
GAAGCCGCCGGCGGCGGCGGCGGCGGCGAGGAAGAAGAGGACGTAGACGTCGACGGCCTC
GCCAGCTTCCTCGAATTCGAGATCCTCTCCGGATCCAGCGAGGAAGATCCTCTCGACCTG
GAGGAGGGCGAGGAGGAGAAGGAGACGGGAGTGAACGATGAAGCGAAGAACGGTAAGAGG
AAGCAAGATTCGCTGTCGGAGGGAGATGGCAGCGGCAGCGGCAGCGGCAGCGAGGACGAG
CATCAGAAGAGGGCGAGGAAGGAGAAGGGAAAAGGAAAGGTTTTGACGGAGGGGCCGCCT
CAGATTGACACGGGCATGTTCACCAACGTCCCCCCGGAGCTGTTCCTGCAGATCTTCAAG
TTCCTCTCCTCGGAGGACCTCATCTCGTGTGCCCTTGTCTGCCGCTTCATGAACGCCGCC
GCATCTGACGAGACCCTTTGGCGCCGCTTGTATTGTATGAGGTGGGGCCTGTCCTCTAAT
GCCACCTCTAACGCGAAACTCAGGGAGTGCGCTTGGAAGAGCCTCTATATTCAGCAAGAC
AGAGAAGATATGGTTGAATTCGTGAGATATACCCCTACAGAATTCAAAGAGTACTATATC
CAGATGCAGGCTGCAAAAAGGAGTCAAGCACCCCTTCCCTCAGAAGTGAATGACGACAAG
ATTGTTCTTGATAAGACAGTAGCTGATCAGGTGTCTAGTTGGAAAAGCCGCAGAGGCCTT
ACTGATGATGCAGTCAAGGGGCATTCTTGCTCCGGAAGTACTTGCTTCTATAAGCAGATT
GGTGATGCTTATATTTGTGAGAAGACTGGTCGTGTACATGTTTGCGATGATGCCTGTCGT
GAATTTGTCTTGGACCAAACTAGTGGGTTACTTGTCTGTACGATATCTGGGCACTGTTTT
GAGAGGTTTTTATGTCCTGATGACGAGTGGGACACTTGTGATACTGATCAGCAGCAAGGC
GGTGTGACTGATGAAGCAGAGCCATTCATGGGATCTGGACGATTTGCACGTGCTTATCAG
TTGGGTTACAGCTGTGCCGACGAGAAGGAACTTGAGTACGCTTTGCGGTTCTGCTGATAT
TCTCCCGGTCATTTGATCCTTCAGACCTCCTTCAGACCTTCACTCCGTGTGCTCGCTACA
CGAGAGCAAGTTTTTGGTTGGCAAGGGAAATAAGATGCAGGAAGCTCTATACTACACTTT
ACTTGATCTCGACCTCTGGGGATGTGCCTATGAATGCAAAATCAGCAGAAATGCTGGTAT
GCTTTTCAATCAGTCGAGGGAGCTGATATGTTGTTGTATAGTTTCCTAAATTATGAGAGA
TGTATCCTAGTAATAAAATAAATGCTTGACCACTTGTAATCCTCACAACAGTGCCCATTT
GTGGGCACTGTAACCTATTCACTGAAGTAGTTGAGGCATGTATTAAGTTACTGTTTCTTT
TAGCATACAAAAAAAAAAAAAAAAA

Homology of Contig U35_15326 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g49530.1	376	3e-172	protein\|OsFBX206 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi1g34820.2	385	0.0
Arabidopsis v10	AT5G45360.1	316	1e-101	F-box family protein \| chr5:18384783-18386670 REVERSE LENGTH=316