barSeed - Barley Seed Development Database

Probe CUST_28772_PI390587928

Source Contig U35_15327

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28772_PI390587928	Hv_44K_v2	GTGATGTCTGTCGATACATGTGGTAATAATAAGATTTTGGCATCGTTTACCGAGGACAAA	608	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79331.2	1805	3e-22	1750 - 1805	100	56 / 56	plus	ABC03010
MLOC	MLOC_79331.1	2389	3e-22	2334 - 2389	100	56 / 56	plus	ABC03010 ABC06989
JLOC1	JLOC1_52847.1	2299	3e-24	2134 - 2192	100	59 / 59	plus
Harvest21	ABC03013	824	3e-25	751 - 810	100	60 / 60	plus
Harvest21	ABC03012	1463	1e-23	1391 - 1450	98	59 / 60	plus
Harvest21	ABC03011	2067	1e-23	1996 - 2055	98	59 / 60	plus
Harvest35	U35_15327	682	3e-25	609 - 668	100	60 / 60	plus

Contig Sequence (682 bp)

>U35_15327 682 Hv_44K_v2
CACCACGGCCAAGCTGGTTGCCAAGTACCGGCCCAGGGTTCCGATCCTTTCGGTGGTCGT
CCCGGTGCTGACGACCGACTCGTTCGACTGGACCATTAGCTCCGAGGGCCCCGCCAGGCA
CAGCCTGATCTACAGAGGCCTGATCCCGCTCCTTGCCGAAGGCTCTGCCAAGGCCACAGA
CTCAGAGTCGACAGAGGAGATCCTCCAGGCTGCGCTCAAGTCGGCCGTGAAGAAGCAGCT
CTGCAAGGCCGGCGATGCTGTCGTCGTCCTGCACCGCATCGGCGTCGCCTCCGTCATCAA
GATCTGCACCGTCCAGTGATGTCCGCCGGGCATGGTGACCCGAGCACCCCGGTCCTTGCT
GCCGTGGCGAAACCTGGGTCTTGTGGAAACAAGTTGATATCGTACCGTCCGTTGCAGTTT
GTTGCATAGATCCGATCCGAGCTGGTAAATTAGGAGGGAGAGGACTCCGTTATATAGAGC
TCTTTTATTACCGTTGGTATGCCCCCTGTAGTATGGTGTGTGGCAGGTGTCATGCCTGCA
CAATTTTTTCTCTAATTAGCTGCTGCTGCTGCTTGTTGTATTCTGAACTCTGAAGTACTC
GTTTGGTAGTGATGTCTGTCGATACATGTGGTAATAATAAGATTTTGGCATCGTTTACCG
AGGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_15327 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g58110.1	512	8e-56	protein\|pyruvate kinase, putative, expressed
Brachypodium v1_2	Bradi5g26140.1	515	2e-57
Arabidopsis v10	None