- Probe CUST_28761_PI390587928
- Source Contig U35_27309
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28761_PI390587928 | Hv_44K_v2 | ATATATTAGTAGTACTATTTGTGCTGCATATAGCTTGCTCAAAAGAGGCAAGGCAAATAC | 391 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.048 | 0.288 | 0.791 | 1.795 | 1.409 | 1.589 |
| Raw | 38.322 | 374.227 | 858.736 | 3041.543 | 842.451 | 1027.391 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK248493.1 | 1230 | 2e-24 | 1124 - 1183 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_53201.1 | 657 | 2e-24 | 295 - 354 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_34158.1 | 519 | 8e-25 | 295 - 354 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_27309 | 473 | 3e-25 | 392 - 451 | 100 | 60 / 60 | plus |
Contig Sequence (473 bp)
>U35_27309 473 Hv_44K_v2 GACCCCGCGCCGCCCAAGCGGTGCCGCAAGTGCGAGGAGACCATCCTGGAGGCCGTCATC GCCTCCTCCTCGTCTGCCGGCGGCAGCCGCGGCGGCGGCCGCGGGGGGTTCTTGCCGTAG TAGCAGTAGAAGAAGCGTCATGTCCCCTGGCGGGTGGGTCCAGGTCGGTGTGGGTAGTTG AGCTGCCCCTTTCTGCTGGTGGCCCACGCTGCAGTACTGCCGCAGTGAAGTTTTTCTTCT GAAGTAATGGAAAGGAGAATAATTAGAGCTGTGAATGTGACTCTTTCCTACAACCTTTTT GGCCCTGCACTTGCACGACTCCTCCAGTACGTGTGGATGTGGGGAACATGACATCAGACT TGTAAAGAGCGTGCGTGGTCTCGTGTAAAAAATATATTAGTAGTACTATTTGTGCTGCAT ATAGCTTGCTCAAAAGAGGCAAGGCAAATACATTTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_27309 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |