barSeed - Barley Seed Development Database

Probe CUST_28752_PI390587928

Source Contig U35_41600

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28752_PI390587928	Hv_44K_v2	TGTTATTGACTCTGGTCAGAGTTATCGTGGTTATTCTATTCTTCACGTGGCGCATGAGGC	405	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.682	0.569	1.904	2.202	1.002	1.176
Raw	2.670	2.783	19.531	32.049	4.698	7.107

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369485	2776	6e-24	330 - 388	100	59 / 59	plus	None
MLOC	MLOC_59327.1	2558	6e-24	2297 - 2355	100	59 / 59	minus	None
JLOC1	JLOC1_38605.1	2710	3e-24	207 - 265	100	59 / 59	plus
Harvest35	U35_41600	664	3e-25	406 - 465	100	60 / 60	plus
Harvest35	U35_10718	614	1e-24	322 - 380	100	59 / 59	plus

Contig Sequence (664 bp)

>U35_41600 664 Hv_44K_v2
ATTCAGTTCACTGCTTGGCTGCTTGCTCCCCTACATCACTCTCTCACTCACTCAGGGTGC
AAGAACAGGCTCTGCTACTTGGTAGGCGGACCAAAGGTGGCATGGCTTCTCCGGCGGCCG
TCGGCGGGGGTCGTCTAGCCGACCCACTGCTGGCCGCCGACGTCGTCGTCGTCGGCGCCA
AAGACAAGTACTGGGTGCCCGCCGACGAGAGAGAGATCCTGGCGTCGCAGAGCAGCGGCG
GCGGTGAACAGGACGGCCGGGCACCGCTGCTATACCGCACGTTCAGGGTCAAGGGCTTCT
TCATCAACCTTTACAGATTGGATCTAAATGTTCTTCTCGATCAGAAGGGGCCCCGCCTCC
GGCTCCATTTTATATAGACGAAACCAGATGATACCTGAACCTGAATGTTATTGACTCTGG
TCAGAGTTATCGTGGTTATTCTATTCTTCACGTGGCGCATGAGGCACCGGGACTCGGACG
CGATGTGGCTGTGGTGGATCTCGGTCGTGGGCGACCTCTGGTTCGGAGTCACCTGGCTGC
TCAACCAGATCACCNAGCTCAAGCCCAGGAAATGCGTCCCCAGCATCTCCGTCCTGAGAG
AGCAGCTCGACCAGCCCGACGGCGGCTCCGACCTGCCCCTTCTCGACGTGTTCATCAACA
CCGT

Homology of Contig U35_41600 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None