barSeed - Barley Seed Development Database

Probe CUST_28751_PI390587928

Source Contig U35_15338

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28751_PI390587928	Hv_44K_v2	GGAACTTTGTATTTGTGTTATTCAGAATTTCTTGCCCATGTAACTAGTGCTGTTATCACA	1521	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.523	1.595	1.327	0.708	0.238	0.218
Raw	13208.480	20905.287	15526.600	12991.457	1554.317	1554.546

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250212.1	2751	2e-24	2666 - 2725	100	60 / 60	plus	ABC03479 ABC48348
MLOC	MLOC_53885.1	2838	2e-24	74 - 133	100	60 / 60	minus	ABC03479 ABC48348
JLOC1	JLOC1_34648.2	2828	8e-25	2670 - 2729	100	60 / 60	plus
JLOC1	JLOC1_34648.1	3041	8e-25	2883 - 2942	100	60 / 60	plus
Harvest21	ABC03479	1645	3e-25	1522 - 1581	100	60 / 60	plus	ABC03479
Harvest21	ABC48348	416	1e-23	59 - 118	98	59 / 60	minus	ABC48348
Harvest21	ABC46300	381	1e-23	38 - 97	98	59 / 60	minus
Harvest35	U35_15338	1651	3e-25	1522 - 1581	100	60 / 60	plus

Contig Sequence (1651 bp)

>U35_15338 1651 Hv_44K_v2
GCACTCTCTTCGGAAGTGTCCATGAGAAGATGCCTGAGGTAATGGGGAGCATGCGGAGCA
CCTTGTTTCCTAACTTTGGCAGCATGTTTAGTGTGGCTGAACAGCAGCAGGCTAAAGCTG
ACTGGGATGCTGAGAGTCATAGGGATGATGAAGATTATGCATCGGATCATGGTGCTGATG
ACATTGAGGATAACCTCAATAGCCCGCTTATTTCTCGTCAAGCGACAAGCGTGGAGGGTA
AGGAGATTGCTGCACCTCATGGAAGCATAATGGGTGGTGTGGAAAGTAGTAGCATGCAGG
GAGGGGACGCAGTAAGCAGCATGGGCATTGGTGGGGGGTGGCAGTTAGCTTGGAAGTGGA
CTGAGAGAGAAGGTGCAGATGGGCAAAAAGAAGGTGGCTTCCAGCGTATTTACTTGCATG
AGGAGGGTGTGTCAGGTGATCGGAGAGGCTCTATATTGTCTATGCCAGGAGGTGATATTC
CTCCTGGTGGTGAGTATATCCAGGCAGCCGCTCTAGTGAGCCAACCTGCTCTTTACTCGA
AGGACCTGATAGAGCAGCAGCTTGCTGGTCCAGCCATGGTACATCCATCCGAGGCAGTTG
CCAAGGGTACAAAGTGGGCAGAACTATTTGAACCTGGAGTGAAGCATGCACTGTTTGTTG
GCATTGGATTACAGATCCTGCAGCAGTTTGCGGGTATCAACGGAGTCCTGTATTACACGC
CTCAGATACTTGAGCAAGCAGGTGTTGGGATTCTTCTATCAAACATTGGACTAAGCTCTT
CCTCTGCATCTATTCTTATTAGTGCCTTGACAACCTTGCTGATGCTTCCCAGCATTGGCA
TCGCCATGAGACTCATGGATATGTCAGGAAGAAGGTTTCTTCTCCTCTCAACAATCCCTG
TCTTGATAGTGGCACTAGCTATCTTGGTTTTGGTGAATGTTCTGGATGTGGGAACCATGG
TGCACGCCGCTCTCTCAACGATCAGTGTCATAGTCTACTTCTGCTTCTTCGTCATGGGTT
TTGGACCTATCCCGAATATTCTCTGCGCGGAGATTTTCCCCACCTCCGTCCGTGGCATCT
GCATTGCCATCTGCGCACTAACCTTCTGGATTGGTGACATCATCGTGACATACACTCTTC
CCGTGATGCTCAACGCCATCGGACTCGCTGGAGTTTTCGGAATATATGCTGTCGTTTGCA
TGATAGCCTTCGTATTCGTCTACATGAAGGTCCCTGAGACAAAGGGCATGCCCCTGGAGG
TCATCACCGAGTTCTTCTCGGTCGGGGCGAAGCAGGGCAAGGAAGCCACAGACTAGTTGC
TCTGATCCGGTGATCCGCGTCGCTGGTGGTAATTTTGTGTTGTCATAACTACTACTACAC
TGGTTAACCTGCGATGCTTTGGTTAAGAAACTTCAAAGGGAGCAGATACGAAAGACTTTA
CATCGTGAGGCTGAATCGTGTCGTCGTAGGCCGGCTTTTGGAAGTAGGATATGTACTTAG
ATCATCTGTTCTTTTCGCCTTGGAACTTTGTATTTGTGTTATTCAGAATTTCTTGCCCAT
GTAACTAGTGCTGTTATCACAATTTATGTCGTTTATGTTTTAAAAAAAAAAAAAAAAAGC
TCGGTCGGTCCATTTAAAAAAAAAAAAAAAA

Homology of Contig U35_15338 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g39440.1	741	protein\|transporter family protein, putative, expressed
Brachypodium v1_2	Bradi3g32210.2	742
Arabidopsis v10	AT4G35300.1	739	\| Symbols: TMT2 \| tonoplast monosaccharide transporter2 \| chr4:16796432-16799071 REVERSE LENGTH=739