barSeed - Barley Seed Development Database

Probe CUST_28750_PI390587928

Source Contig U35_15339

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28750_PI390587928	Hv_44K_v2	ATAATTGTTACCTACAGCCTACCTGTGATGCTGAATGCTATTGGCCTGGCAGGTGTCTTT	2211	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358318	2725	2e-24	2197 - 2256	100	60 / 60	plus	ABC06132 ABC40390
MLOC	MLOC_38534.1	1931	2e-24	413 - 472	100	60 / 60	minus	ABC06132 ABC40390
Harvest21	ABC06132	2685	3e-25	2212 - 2271	100	60 / 60	plus	ABC06132
Harvest35	U35_15339	2698	3e-25	2212 - 2271	100	60 / 60	plus

Contig Sequence (2698 bp)

>U35_15339 2698 Hv_44K_v2
GCAGGGCAGTGAAGGAGGGGTATCTCTTGGCTCCTATTTGAGGCGGCTTTGCTCGGTTCT
GATCTACCGCACCAGCCACCAGGGGACTGCCGCTTTTTGGGCTTCTCCATCTTCATCTCC
TCTTCTTGGTTGGTGTTCTCGAGAGCTGCGGGGATCCTCGGTGGAGAGAAGAAGATGTCG
GGCGCCGCACTGGTCGCGATTGCGGCTTCCATCGGCAATCTGCTGCAGGGGTGGGACAAT
GCCACAATTGCTGGTGCTGTCCTGTACATCAAGAAGGAATTCCAACTCGAAAATGATCCG
ACCGTGGAGGGGCTCATCGTGGCCATGTCGCTCATCGGCGCAACCATCATCACCACGTTC
TCCGGACCGGTATCAGACTGGGTTGGCCGGCGCCCTATGCTGATTCTCTCTTCAATTCTC
TACTTCCTCAGCGGCCTAATCATGCTATGGTCACCCAATGTCTATGTACTGCTTCTGGCA
CGCCTTGTCGATGGCTTCGGTATCGGCTTGGCTGTCACGCTGGTGCCTTTGTACATCTCA
GAGACGGCTCCCTCGGAGATCAGGGGACGGCTCAACACGCTTCCACAGTTCAGCGGGTCA
GGAGGGATGTTCTTGTCATACTGCATGGTGTTCGGGATGTCACTCTTGCCATCACCTGAT
TGGAGAATTATGCTTGGTGTTCTCTCCGTTCCTTCATTGTTTTTCTTCGGCTTGACAGTA
TTTTACCTGCCAGAATCTCCGAGATGGCTTGTCAGCAAGGGCCGAATGGCAGAGGCCAAG
AAGGTGCTGCAAAGATTACGGGGAAGGGAGGATGTCTCAGGAGAAATGGCCCTTCTTGTT
GAAGGTTTGGAGGTTGGAGGAGACACCTCCATTGAGGAGTACATAATTGGACCAGCTAAT
GACCCAGCTGGTGATCATGTTGTTGATGGCGATAATGACCAAATAACACTATATGGGCCT
GAAGAGGGCCAATCATGGATTGCTCGACCTTCCAAGGGACCCAGCATGCTTGGAAGTGTG
CTTTCTCTTGCATCTCGTCATGGCAGCATGGTGAACCAGAGTGTGCCCCTTATGGATCCT
CTAGTCACATTTTTCGGAAGCGTTCATGAGAACATGCCTCAAGCTGGAGGAAGCATGCAG
AGTACATTGTTTCCTAACTTTGGCAGCATGCTCAGTGTGGCAGATCAGCATCCAAAAACT
GAGCACTGGGATGAGGAGAACGTTCATAGGGACGATGAGGAATACGCATCTGATGCTGGA
GGTGACTACGAAGATAATGTCCACAGCCCGCTGCTGTCGCGACAGACCACAAACACGGAT
CGGAAGGATCATGGTCACCATGGAAGCACTTTGGGCATGAGAAGGAGAAGTCTCTTGGAA
GAGGGTGGGGAGGCAGTCAGCAGCACTGGTATTGGTGGGGGGTGGCAACTCGCATGGAAA
TGGTCAGAGCGACAAGGCGAGGATGGCAAGAAGGAAGGAGGCTTCAAGAGAATCTACTTG
CACCAAGAGGGGGTGGCCGACTCAAGAAGGGGCTCTGTTGTTTCACTTCCTGGTGGGGGT
GATGCGACCCAAGGGGGCAGTGGGTTCATACACGCTGCTGCTTTGGTAAGCCACTCGGCT
CTTTACTCCAAGGATCTTATGGAAGAGCGTATGGCGGCCGGTCCAGCCATGACTCACCCA
TCGGAGGCAGCTCCCAAAGGTCCAATCTGGAAAGATCTGTTTGAACCTGGTGTGAGGCGT
GCACTGTTTGTCGGCGTTGGAATTCAGATGCTTCAGCAGTTTGCTGGAATTAATGGAGTT
CTCTACTATACTCCTCAAATTCTGGAGCAAGCTGGTGTGGCGGTTCTTCTTTCCAATCTT
GGCCTCAGTTCAGCATCAGCATCCATCTTGATCAGTTCTCTCACCACCTTACTCATGCTC
CCTAGCATTGGTGTAGCCATGAGACTTATGGATATATCTGGAAGAAGGTTTCTGCTACTG
GGCACAATTCCCATCTTGATAGCATCCCTAATTGTTTTGGTTGTGTCCAATGTTATCACC
TTGAGTACGGTGCCCCACGCTGTGCTCTCCACAGTTAGCGTCATTGTCTACTTCTGCTGC
TTTGTTATGGGCTTTGGCCCGATCCCCAACATTCTTTGTGCAGAGATTTTCCCCACCAGA
GTCCGAGGTGTCTGCATCGCTATTTGCGCTCTCACATTCTGGATTTGTGACATAATTGTT
ACCTACAGCCTACCTGTGATGCTGAATGCTATTGGCCTGGCAGGTGTCTTTGGTATATAT
GCAATCGTTTGCTGCATCGCCTTTGTGTTCGTCTACCTAAAGGTCCCAGAGACAAAGGGT
ATGCCCCTCGAGGTCATCACCGAGTTCTTTGCGGTTGGGGCAAAGCAAGCGCAGGCCACC
ATTGCCTGATTTGCCATGAAGCTTTGCTTTCAGTTTGCACACTGCACTGAAAATTGCAAA
TTGGACGGATCCTCGTGAGGAACGGAAAAACTTTGAGTTGTAAATGAGATAACTACCCAA
AGAATTCATCATGAGGAATGGAAGCTGTAAAAGTAGAAGGATTTCATGCCCCCATTTCAT
TGTCTATTCTTGTATTAGTTGTTGTAGGGATGTTCAACTTTCTAATCTGATTCTGAACTA
CTACGTTGATGTCTTAAATAAAGAAAAAACATCCTGTGTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15339 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g13560.4	747	protein\|transporter family protein, putative, expressed
Brachypodium v1_2	Bradi3g08690.1	750
Arabidopsis v10	AT4G35300.1	739	\| Symbols: TMT2 \| tonoplast monosaccharide transporter2 \| chr4:16796432-16799071 REVERSE LENGTH=739