barSeed - Barley Seed Development Database

Probe CUST_28749_PI390587928

Source Contig U35_41603

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28749_PI390587928	Hv_44K_v2	CCGGAGTACTACAACAGTCTGAAATCATACAGGTCCTGGAGCCAGGTGATATACATGTAC	577	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.317	3.432	1.387	0.570	0.229	0.188
Raw	490.983	611.432	210.064	146.560	19.305	17.184

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62343.1	1460	2e-24	1058 - 1117	100	60 / 60	plus	None
JLOC1	JLOC1_40799.1	1532	8e-25	1095 - 1154	100	60 / 60	plus
Harvest35	U35_41603	642	3e-25	578 - 637	100	60 / 60	plus

Contig Sequence (642 bp)

>U35_41603 642 Hv_44K_v2
CGCAATCCATGAGCTCAGCCACATCCTCGCCTTCACCACCCCATCCCTAAACCGCTGGCT
AGGCATCTTCGCAAACCTCCCCATCGGCGTCCCGATGTCGGTGACATTCCAGAAATACCA
CCTGGAGCACCACCGGTTCCAAGGCGTGGACGGGATCGACATGGACATCCCCAGCCAAAC
CGAGGCGCACGTCGTAAAGAACGCTGTCAGCAAGTCCGTCTGGGTCGTGCTCCAGCTCTT
CTTCTACGCGCTCAGGCCGCTCTTCCTGAAGCCGAAGCCTCCAGGCCTGTGGGAGTTCAC
CAACCTGACGATCCAGCTCGCGCTCGACGCGGCCATGGTGTACCTCTTCGGCTGGAAGTC
GCTGGCCTACCTTATCCTGTCGACGTTCCTCGGCGGCGGCATGCACCCGATGGCAGGCCA
CTTCATCTCGGAGCACTACGTGTTCAGCCCGGAGCAGGAGACCTACTCCTACTACGGGCC
GCTGAACCTGATGACGTGGCACGTGGGGTACCACAACGAGCACCACGACTTCCCCAGGAT
CCCCGGCGCCCAGCTGCACAAGGTGAAGGAGATCGCGCCGGAGTACTACAACAGTCTGAA
ATCATACAGGTCCTGGAGCCAGGTGATATACATGTACGTCAT

Homology of Contig U35_41603 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g42660.1	329	1e-147	protein\|sphingolipid delta desaturase, putative, expressed
Brachypodium v1_2	Bradi5g16510.1	330	3e-153
Arabidopsis v10	AT4G04930.1	332	2e-129	\| Symbols: DES-1-LIKE \| fatty acid desaturase family protein \| chr4:2509236-2510918 FORWARD LENGTH=332