barSeed - Barley Seed Development Database

Probe CUST_28747_PI390587928

Source Contig U35_41604

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28747_PI390587928	Hv_44K_v2	CATATTAGACCAGTCATACGTTTTGATTGTGTTATGCTCATACGAGGGGCCCATGCCATT	583	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.023	2.513	1.592	0.542	0.686	0.621
Raw	41.305	38.847	21.493	10.095	3.536	3.848

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77844.1	1172	7e-23	328 - 387	98	59 / 60	plus	ABC02449
Harvest35	U35_41604	694	3e-25	584 - 643	100	60 / 60	plus

Contig Sequence (694 bp)

>U35_41604 694 Hv_44K_v2
CCTCCTCCCCACACCCCGCCACCACCACCTTCCTCGGCCACCGGCGGCGGCGACAATGGT
GCAGGGACGCCAGGGCCAGCGCGTCCGGCTATACGTGCGGGGCACCATCCTGGGCTTCAA
GAGGTCCAAGTCGAACCAGTACGAGAACACGTCGCTGCTGCAGGTGGAGGGGGTGAGCAC
CAAGGAGGACGTGTCCTACTACGCCGGCAAGCGCATCGCCTACGTCTACAAGGCCAAGAC
CAGGAGCAGCGGCACCACCTTCCGCTGCATCTGGGGCAAGGTCACGCGCCCCCACGGCAA
CTCCGGCGTCGTCCGCGCGCAGTTCCGGTCCAACCTCCCCGCTACCTCCATGGGCAAGAA
GGTCCGCGTCTTCATGTACCCCAGCAGCACCTAAGGTAGAATGGATTGTTGAACAGTAAT
TCTCCAGTGGTTTATGCTCGTATATAGTGTGTTTGTTTCAGTGATAGTGTCACGTTTCAG
CTCATTGTGTTAGGAGTTCAGGAATGAGTGCAGTTGTGTCTAGATGATTCAGGTATCCAA
CGACCATGGCCTAATTTTGGGCTCATAAGTGTTGAAATGGTTTCATATTAGACCAGTCAT
ACGTTTTGATTGTGTTATGCTCATACGAGGGGCCCATGCCATTTGGGGGAAGCTCTTTCA
GTAGCTTCGAAATACCTGCAAGTTCTCTGCGGGG

Homology of Contig U35_41604 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48310.1	112	3e-64	protein\|60S ribosomal protein L35a-3, putative, expressed
Brachypodium v1_2	Bradi2g17180.1	113	5e-70
Arabidopsis v10	AT1G07070.1	112	5e-59	Ribosomal protein L35Ae family protein \| chr1:2168652-2169703 FORWARD LENGTH=112