barSeed - Barley Seed Development Database

Probe CUST_28746_PI390587928

Source Contig U35_27311

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28746_PI390587928	Hv_44K_v2	ATGAGCTTATAAGAAGTTTGTCCTCCCATGGCGATGTTGTGGGATGGAGAACTTTGCTTG	519	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56471.3	6275	2e-24	1354 - 1413	100	60 / 60	minus	ABC01811
MLOC	MLOC_56471.2	3196	2e-24	1722 - 1781	100	60 / 60	minus	ABC48531
MLOC	MLOC_56471.4	3556	2e-24	1238 - 1297	100	60 / 60	minus	ABC01810 ABC01811 ABC48531
MLOC	MLOC_56471.1	3781	2e-24	1463 - 1522	100	60 / 60	minus	ABC01810 ABC01811 ABC48531
JLOC1	JLOC1_36525.1	2578	8e-25	1463 - 1522	100	60 / 60	minus
Harvest21	ABC24977	602	3e-25	520 - 579	100	60 / 60	plus
Harvest35	U35_27311	602	3e-25	520 - 579	100	60 / 60	plus

Contig Sequence (602 bp)

>U35_27311 602 Hv_44K_v2
GCAATGGGCTTGGTGGATAGCATGAGACAGGAGGGACTGAAACAAACACAGGGACTCTTG
TGGGCATGCTCTCTGCGTGTGGAGTGTCAGGGGCAATCGTACCCGGTCGTCGCATCCATG
AGCTTGCGCTGGAGCTTGGCCTTGAGCTTGACACTGCATTAGGAACATCGCTTGTGGATA
TGTACTTCAAATGTGGCTACCCCAAGGAGGCAATTGCGGTTTTTTATGCAATGCACGACA
GGGATGTGATGGCATGGACTGCGATGATTATGGGATTGGGAGTTAATGGGCAGTCAGATG
CCGCGATATCCCTGTTTCACTCGATGCAACAAAACGGTGTCACTCCTAACGAGGTTACCT
TTCTTGCGGTGCTGAATGCTTGTAGCCATGGCGGGTTAGTGTTTGAAGGGAAGAAGCACC
TCGAGAGCATGGTGCGGCAATATGGCCTATCTCCTCACACCGAACACTATGGTTGCATAA
TCGATCTCCTGGGAAAGGCGGNGCGATTGGATGAAGCTTATGAGCTTATAAGAAGTTTGT
CCTCCCATGGCGATGTTGTGGGATGGAGAACTTTGCTTGCAGCCTGCAGGGTTCATGGCA
AT

Homology of Contig U35_27311 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38610.1	623	8e-93	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi1g20570.1	561	7e-99
Arabidopsis v10	AT1G26900.1	572	2e-58	Pentatricopeptide repeat (PPR) superfamily protein \| chr1:9319756-9321474 REVERSE LENGTH=572