barSeed - Barley Seed Development Database

Probe CUST_28740_PI390587928

Source Contig U35_41608

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28740_PI390587928	Hv_44K_v2	CCTCCTTCAGTCGCGATCGTCGATCAGATAGACCGTGTCCAGAATCCGGCAAGGTTTTGT	303	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66511.2	1537	2e-24	44 - 103	100	60 / 60	plus	ABC02031 ABC38863 ABC39344 ABC49830
Harvest35	U35_41608	646	3e-25	304 - 363	100	60 / 60	plus
Harvest35	U35_31809	595	2e-22	131 - 185	100	55 / 55	plus

Contig Sequence (646 bp)

>U35_41608 646 Hv_44K_v2
AAAAAGCAGATGTTGTTGGAGGCGGGTGGTGTGGTGGGAAGTGGGATGGGATCTGAACTG
ATTGGCGCCGGTTGGTAGCAGTCGGTGTGTGTTTCATGCGAGGGGGAGGGGGAAGGCAGG
CAGACAGACAGGGGGCGCTTATAAATACGGCTCAGATCTGGGGAGGGCTTTCCATCCACC
TCGTCTCGTCGGTCTAATCCGATTCAAACGCGCAGCTTCCTCGTGTCCGAACTAAGCCCC
AATCCCACCACCGCCGCCGCTGGTGAGCATCCGTCCGTTCATTCATCCTCTCCTTCCCTC
CTTCCTCCTTCAGTCGCGATCGTCGATCAGATAGACCGTGTCCAGAATCCGGCAAGGTTT
TGTTTGGGTTGGGTTCGGTTGGGCTGGGCTGCTGCGTCGTGTGGCTCTCTGACGATCTCT
CGGCCCGGTTGGATCTGCGTGTGCAGGTGCTCGGCGCGATGGCGCAGAAGGACGCCACCA
ATGGCAACGGCGCCACCACGCGCCCGCCGCCCACGCCCTCCCCCATCCGCTTCTCCAAGT
TCTTCCAGGCCAACATGCGGATCCTGGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACC
TCGTCGACAAGCTCATGGAGAACGAGAAGAACGAGGTCATTGTTGC

Homology of Contig U35_41608 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None